The 2.0 version of rSNPBase

Variant report

Variant rs960245
Chromosome Location chr6:144501331-144501332
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:144473400-144513800 Weak transcription Primary T cells from cord blood blood
2 chr6:144473600-144507800 Weak transcription Sigmoid Colon Sigmoid Colon
3 chr6:144479000-144511800 Weak transcription Psoas Muscle Psoas
4 chr6:144480200-144508200 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr6:144481000-144507800 Weak transcription Left Ventricle heart
6 chr6:144481200-144507800 Weak transcription Right Ventricle heart
7 chr6:144487000-144507800 Weak transcription Esophagus oesophagus
8 chr6:144488800-144510000 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr6:144489400-144508200 Weak transcription Liver Liver
10 chr6:144490400-144503400 Weak transcription Spleen Spleen
11 chr6:144493600-144507600 Weak transcription Placenta Placenta
12 chr6:144497400-144508600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr6:144498200-144503200 Enhancers Primary monocytes fromperipheralblood blood
14 chr6:144498800-144502400 Enhancers Primary neutrophils fromperipheralblood blood
15 chr6:144498800-144503400 Weak transcription Right Atrium heart
16 chr6:144499000-144501400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr6:144499400-144501400 Enhancers Primary T helper cells PMA-I stimulated --
18 chr6:144499400-144503200 ZNF genes & repeats GM12878-XiMat blood
19 chr6:144499600-144511000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
20 chr6:144499800-144507800 Weak transcription Adipose Nuclei Adipose
21 chr6:144500400-144501400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
22 chr6:144500600-144501400 Enhancers Fetal Heart heart
23 chr6:144500600-144501600 Enhancers Primary T helper cells fromperipheralblood blood
24 chr6:144500600-144501600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr6:144500600-144502000 Enhancers Primary B cells from peripheral blood blood
26 chr6:144500600-144502600 Enhancers Primary B cells from cord blood blood
27 chr6:144500800-144501600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr6:144500800-144508000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
29 chr6:144500800-144518800 Weak transcription Primary T killer naive cells fromperipheralblood blood
30 chr6:144501000-144501600 Enhancers Primary T helper naive cells from peripheral blood blood
31 chr6:144501000-144502000 Enhancers Primary hematopoietic stem cells blood
32 chr6:144501000-144504000 Enhancers Primary hematopoietic stem cells short term culture blood
33 chr6:144501000-144505400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
34 chr6:144501000-144507600 Weak transcription Primary T cells fromperipheralblood blood
35 chr6:144501000-144507800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
36 chr6:144501000-144507800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
37 chr6:144501000-144507800 Weak transcription Lung lung
38 chr6:144501200-144502000 Enhancers Primary T regulatory cells fromperipheralblood blood
39 chr6:144501200-144507800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
40 chr6:144501200-144507800 Weak transcription Duodenum Mucosa Duodenum
41 chr6:144501200-144508400 Weak transcription Rectal Mucosa Donor 31 rectum
42 chr6:144501200-144520000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood

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Last update: Aug 31, 2015