Variant report

Variant	rs949947
Chromosome Location	chr6:150225247-150225248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079002	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56915413	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58271308	1.00[AMR][1000 genomes]
rs60560948	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6910890	1.00[AMR][1000 genomes]
rs6936077	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7767911	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs949948	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150218800-150227600	Weak transcription	Fetal Intestine Small	intestine
2	chr6:150219000-150225800	Weak transcription	Right Atrium	heart
3	chr6:150219200-150225400	Weak transcription	Psoas Muscle	Psoas
4	chr6:150219200-150226200	Weak transcription	Spleen	Spleen
5	chr6:150219400-150226000	Weak transcription	Lung	lung
6	chr6:150220200-150225400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:150222600-150226600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:150222600-150229800	Weak transcription	Pancreas	Pancrea
9	chr6:150223000-150226600	Weak transcription	Esophagus	oesophagus
10	chr6:150225000-150225600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:150225200-150225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:150225200-150227400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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