Variant report

Variant	rs9501605
Chromosome Location	chr6:32160524-32160525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:149)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:149 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:32157954-32160925	GM12878	blood:	n/a	n/a
2	RUNX3	chr6:32160057-32161011	GM12878	blood:	n/a	n/a
3	EP300	chr6:32160479-32160869	GM12878	blood:	n/a	n/a
4	RELA	chr6:32160456-32160871	GM15510	blood:	n/a	n/a
5	POLR2A	chr6:32160385-32160857	GM12891	blood:	n/a	n/a
6	NR2F2	chr6:32160367-32160949	K562	blood:	n/a	n/a
7	GABPA	chr6:32160319-32161102	HL-60	blood:	n/a	n/a
8	POLR2A	chr6:32153472-32160911	K562	blood:	n/a	n/a
9	STAT1	chr6:32160513-32160842	GM12878	blood:	n/a	chr6:32160819-32160831
10	FOXM1	chr6:32160349-32160934	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:32160423-32160898	GM12891	blood:	n/a	n/a
12	RCOR1	chr6:32160468-32160888	GM12878	blood:	n/a	n/a
13	MAX	chr6:32160328-32160875	K562	blood:	n/a	n/a
14	POLR2A	chr6:32160353-32160886	GM12891	blood:	n/a	n/a
15	TEAD4	chr6:32160079-32160966	K562	blood:	n/a	n/a
16	SPI1	chr6:32160522-32160924	GM12878	blood:	n/a	n/a
17	POLR2A	chr6:32159457-32160976	K562	blood:	n/a	n/a
18	ATF2	chr6:32160396-32161023	GM12878	blood:	n/a	n/a
19	SP1	chr6:32160508-32161009	H1-hESC	embryonic stem cell:	n/a	chr6:32160732-32160743 chr6:32160733-32160747 chr6:32160734-32160743
20	MAZ	chr6:32159834-32160936	K562	blood:	n/a	n/a
21	SIN3AK20	chr6:32160366-32160644	PFSK-1	brain:	n/a	n/a
22	POLR2A	chr6:32160244-32161081	HUVEC	blood vessel:	n/a	n/a
23	POLR2A	chr6:32160312-32161008	SK-N-MC	brain:	n/a	n/a
24	MAFK	chr6:32160466-32160683	K562	blood:	n/a	n/a
25	ELF1	chr6:32159406-32160862	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:32160296-32161003	HL-60	blood:	n/a	n/a
27	TAF1	chr6:32160502-32160816	GM12878	blood:	n/a	n/a
28	RELA	chr6:32160492-32160873	GM19099	blood:	n/a	n/a
29	CHD1	chr6:32159912-32160675	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:32159796-32160839	GM18526	blood:	n/a	n/a
31	ELF1	chr6:32160062-32160936	K562	blood:	n/a	n/a
32	FOXP2	chr6:32160368-32160835	PFSK-1	brain:	n/a	n/a
33	TAF1	chr6:32160368-32160873	K562	blood:	n/a	n/a
34	TAF1	chr6:32160379-32160891	PFSK-1	brain:	n/a	n/a
35	POLR2A	chr6:32157788-32160915	GM12892	blood:	n/a	n/a
36	POLR2A	chr6:32160302-32160801	HUVEC	blood vessel:	n/a	n/a
37	POLR2A	chr6:32160125-32160972	NB4	blood:	n/a	n/a
38	RCOR1	chr6:32160443-32160721	K562	blood:	n/a	n/a
39	MAX	chr6:32160283-32160884	NB4	blood:	n/a	n/a
40	FOXA1	chr6:32160465-32160834	HepG2	liver:	n/a	n/a
41	ELK1	chr6:32160497-32160878	K562	blood:	n/a	n/a
42	POLR2A	chr6:32159404-32160824	GM12878	blood:	n/a	n/a
43	HEY1	chr6:32160382-32160875	K562	blood:	n/a	n/a
44	HCFC1	chr6:32160177-32160903	K562	blood:	n/a	n/a
45	YY1	chr6:32160335-32160690	GM12878	blood:	n/a	n/a
46	SIN3A	chr6:32160471-32160841	GM12878	blood:	n/a	n/a
47	POLR2A	chr6:32159417-32160802	GM12878	blood:	n/a	n/a
48	FOXP2	chr6:32160325-32160892	SK-N-MC	brain:	n/a	n/a
49	TAF1	chr6:32160494-32160895	GM12891	blood:	n/a	n/a
50	REST	chr6:32160395-32160911	PFSK-1	brain:	n/a	n/a

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:32084304..32090142-chr6:32159452..32164516,8	MCF-7	breast:
2	chr6:32086948..32090712-chr6:32159204..32162196,3	MCF-7	breast:
3	chr6:32093849..32103011-chr6:32158588..32167888,20	K562	blood:
4	chr6:32156687..32160945-chr6:32937394..32941175,4	MCF-7	breast:
5	chr6:32119953..32121978-chr6:32160445..32163462,3	MCF-7	breast:
6	chr6:32095298..32098184-chr6:32156498..32160888,5	K562	blood:
7	chr6:32120233..32126271-chr6:32158822..32166984,18	K562	blood:
8	chr6:32160494..32165534-chr6:32936226..32940511,8	MCF-7	breast:
9	chr6:32094643..32097861-chr6:32156762..32160967,6	MCF-7	breast:

No data

Variant related genes	Relation type
PBX2	TF binding region
ENSG00000204256	Chromatin interaction
ENSG00000204314	Chromatin interaction
ENSG00000258388	Chromatin interaction
ENSG00000221988	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000204315	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000213676	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73729069	1.00[AMR][1000 genomes]
rs9469085	1.00[AMR][1000 genomes]
rs9501396	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017945	chr6:31609641-32481240	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
2	nsv601950	chr6:31785438-32492308	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
3	nsv601951	chr6:31785438-32496748	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
4	nsv601955	chr6:31785453-32484368	Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
5	nsv601956	chr6:31785453-32492308	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	197 gene(s)	inside rSNPs	diseases
6	nsv601961	chr6:31868322-32484368	Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
7	esv2758043	chr6:31871512-32209113	Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
8	esv2759415	chr6:31871512-32209113	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	114 gene(s)	inside rSNPs	diseases
9	nsv601972	chr6:31947594-32484368	Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
10	nsv601975	chr6:31949352-32484368	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
11	nsv601976	chr6:31949352-32508887	Weak transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
12	nsv601977	chr6:31949352-32651056	Bivalent Enhancer Flanking Active TSS Genic enhancers Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
13	nsv601980	chr6:31950266-32484368	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
14	nsv601982	chr6:31951207-32484368	Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
15	nsv601983	chr6:31951367-32484368	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
16	nsv601984	chr6:31951912-32484368	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
17	nsv601999	chr6:31952422-32484368	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
18	nsv602000	chr6:31952422-32552416	Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
19	nsv602015	chr6:31953467-32481507	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
20	nsv602016	chr6:31953467-32484368	Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv602017	chr6:31953467-32505730	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
22	nsv602018	chr6:31953467-32509985	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
23	nsv602019	chr6:31953467-32779803	Transcr. at gene 5' and 3' Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
24	nsv602029	chr6:31955572-32484368	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
25	nsv602035	chr6:31959480-32484368	Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
26	nsv602036	chr6:31959878-32484368	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
27	nsv602052	chr6:31972034-32481507	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
28	nsv602053	chr6:31972034-32484368	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
29	nsv602054	chr6:31972034-32779803	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
30	nsv602086	chr6:31986320-32484368	Enhancers Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
31	nsv1024599	chr6:32007556-32481240	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
32	nsv830629	chr6:32043978-32189787	Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
33	nsv1033939	chr6:32048657-32196256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
34	nsv462876	chr6:32064726-32171683	Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
35	nsv602104	chr6:32064726-32171683	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
36	nsv462877	chr6:32151443-32177900	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
37	nsv602105	chr6:32151443-32177900	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
38	nsv884708	chr6:32154998-32172366	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
39	nsv602106	chr6:32155448-32161430	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
40	nsv884709	chr6:32155581-32166380	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
41	nsv884710	chr6:32155581-32168595	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
42	nsv884711	chr6:32155581-32171683	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	48 gene(s)	inside rSNPs	diseases
43	nsv602107	chr6:32156736-32161430	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
44	nsv602108	chr6:32156963-32161430	Flanking Active TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
45	nsv884712	chr6:32157364-32164062	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
46	nsv884713	chr6:32157364-32166380	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
47	nsv884714	chr6:32157364-32168595	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	47 gene(s)	inside rSNPs	diseases
48	nsv602109	chr6:32158319-32161430	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9501605	COL11A2	cis	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:32152400-32160600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:32156200-32160800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:32156800-32160800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr6:32157000-32160800	Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chr6:32157200-32160800	Active TSS	Primary T cells from cord blood	blood
6	chr6:32157200-32160800	Active TSS	Primary T killer memory cells from peripheral blood	blood
7	chr6:32157400-32160800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:32158000-32161000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:32158000-32161800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:32158200-32161800	Flanking Active TSS	Dnd41	blood
11	chr6:32158200-32162000	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr6:32158200-32163400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:32158400-32160600	Flanking Active TSS	Fetal Intestine Large	intestine
14	chr6:32158400-32160800	Enhancers	Fetal Kidney	kidney
15	chr6:32158600-32160800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:32158600-32160800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:32158600-32160800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:32158600-32160800	Enhancers	Placenta Amnion	Placenta Amnion
19	chr6:32158600-32160800	Flanking Active TSS	HepG2	liver
20	chr6:32158600-32161000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:32158600-32161000	Flanking Active TSS	K562	blood
22	chr6:32158600-32161000	Enhancers	NH-A	brain
23	chr6:32158600-32161600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:32158600-32163000	Weak transcription	Aorta	Aorta
25	chr6:32158800-32162600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:32158800-32162600	Weak transcription	HSMMtube	muscle
27	chr6:32158800-32162800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr6:32159000-32160600	Active TSS	Brain Anterior Caudate	brain
29	chr6:32159000-32160800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:32159000-32160800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr6:32159000-32160800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:32159000-32160800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
33	chr6:32159000-32161400	Active TSS	Rectal Smooth Muscle	rectum
34	chr6:32159000-32162000	Weak transcription	Fetal Brain Female	brain
35	chr6:32159000-32162200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:32159000-32163000	Weak transcription	Psoas Muscle	Psoas
37	chr6:32159200-32160600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:32159200-32160600	Active TSS	Liver	Liver
39	chr6:32159200-32160600	Flanking Active TSS	Fetal Stomach	stomach
40	chr6:32159200-32160800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:32159200-32160800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:32159200-32161000	Active TSS	Brain Hippocampus Middle	brain
43	chr6:32159200-32161600	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:32159200-32162000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:32159200-32162200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:32159200-32162600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr6:32159200-32162600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr6:32159400-32160600	Active TSS	Primary T cells fromperipheralblood	blood
49	chr6:32159400-32160600	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr6:32159400-32160800	Active TSS	Primary T killer naive cells fromperipheralblood	blood

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