Variant report

Variant	rs9501776
Chromosome Location	chr6:1832608-1832609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:1831250..1835471-chr6:1835503..1841068,8	MCF-7	breast:
2	chr6:1829103..1830910-chr6:1832147..1834124,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3778533	0.90[EUR][1000 genomes]
rs3823276	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71550087	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71550088	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9391933	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530548	chr6:1441421-2351608	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv491607	chr6:1580681-1951526	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1020603	chr6:1697548-1921374	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv538093	chr6:1697548-1921374	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv869043	chr6:1744238-2006788	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv538094	chr6:1757776-1907505	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv931941	chr6:1768439-2246781	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv531295	chr6:1773436-2724986	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
9	nsv883383	chr6:1775436-1918572	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv883384	chr6:1787862-1942538	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:1799400-1833200	Weak transcription	Gastric	stomach
2	chr6:1819800-1832800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:1822200-1833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:1822600-1837600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:1829200-1832800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:1829200-1832800	Weak transcription	Brain Germinal Matrix	brain
7	chr6:1829200-1832800	Weak transcription	HepG2	liver
8	chr6:1829400-1837800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:1829600-1832800	Weak transcription	Right Atrium	heart
10	chr6:1829800-1832800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:1829800-1856600	Weak transcription	Primary T cells from cord blood	blood
12	chr6:1830000-1832800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:1830000-1832800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:1830000-1832800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:1830000-1832800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:1830000-1833000	Weak transcription	Esophagus	oesophagus
17	chr6:1830000-1833600	Weak transcription	Colonic Mucosa	Colon
18	chr6:1830200-1833000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:1831600-1833000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:1831800-1838000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:1832400-1833000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:1832400-1833200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr6:1832400-1833600	Enhancers	Fetal Muscle Leg	muscle
24	chr6:1832400-1834000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr6:1832600-1832800	Enhancers	Adipose Nuclei	Adipose
26	chr6:1832600-1832800	Enhancers	HUVEC	blood vessel
27	chr6:1832600-1833000	Flanking Active TSS	Liver	Liver
28	chr6:1832600-1833000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:1832600-1833000	Enhancers	Ovary	ovary
30	chr6:1832600-1833000	Enhancers	Pancreas	Pancrea
31	chr6:1832600-1833200	Flanking Active TSS	Fetal Kidney	kidney
32	chr6:1832600-1833800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr6:1832600-1833800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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