Variant report

Variant	rs9504153
Chromosome Location	chr6:4582427-4582428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:4581473..4584314-chr6:4877773..4880239,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1120117	1.00[EUR][1000 genomes]
rs17138587	1.00[EUR][1000 genomes]
rs6915945	1.00[EUR][1000 genomes]
rs7774045	1.00[EUR][1000 genomes]
rs9328258	1.00[EUR][1000 genomes]
rs9378892	1.00[EUR][1000 genomes]
rs9392611	1.00[EUR][1000 genomes]
rs9504144	1.00[EUR][1000 genomes]
rs9504164	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4581400-4583600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:4581400-4583600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:4581400-4583800	Enhancers	NHEK	skin
4	chr6:4581600-4582800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:4581600-4583600	Enhancers	HMEC	breast
6	chr6:4581600-4583600	Enhancers	HSMM	muscle
7	chr6:4581600-4583800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:4581600-4584000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr6:4581600-4584200	Enhancers	Adipose Nuclei	Adipose
10	chr6:4581600-4584200	Enhancers	Hela-S3	cervix
11	chr6:4581600-4584200	Enhancers	NHLF	lung
12	chr6:4581600-4584400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:4581600-4586200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:4581800-4582600	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:4581800-4582600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:4581800-4582600	Enhancers	Brain Cingulate Gyrus	brain
17	chr6:4581800-4582600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr6:4581800-4582600	Enhancers	Brain Substantia Nigra	brain
19	chr6:4581800-4582600	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:4581800-4582800	Enhancers	Fetal Heart	heart
21	chr6:4581800-4582800	Flanking Active TSS	Osteobl	bone
22	chr6:4581800-4583000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:4581800-4583800	Enhancers	NHDF-Ad	bronchial
24	chr6:4581800-4584400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:4581800-4590000	Enhancers	Placenta	Placenta
26	chr6:4582000-4582600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:4582000-4582600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:4582000-4582600	Enhancers	Brain Hippocampus Middle	brain
29	chr6:4582000-4582600	Enhancers	Left Ventricle	heart
30	chr6:4582000-4582800	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr6:4582000-4583600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:4582000-4583600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:4582000-4583800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:4582200-4582600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr6:4582200-4582600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr6:4582200-4582600	Enhancers	Right Atrium	heart
37	chr6:4582200-4582600	Enhancers	A549	lung
38	chr6:4582200-4582800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr6:4582200-4582800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr6:4582200-4582800	Enhancers	Aorta	Aorta
41	chr6:4582200-4582800	Enhancers	Brain Anterior Caudate	brain
42	chr6:4582200-4582800	Enhancers	Fetal Muscle Leg	muscle
43	chr6:4582200-4582800	Enhancers	Stomach Smooth Muscle	stomach
44	chr6:4582200-4583800	Enhancers	HSMMtube	muscle
45	chr6:4582200-4584000	Enhancers	HUVEC	blood vessel
46	chr6:4582200-4584200	Enhancers	NH-A	brain
47	chr6:4582200-4584400	Enhancers	Monocytes-CD14+_RO01746	blood
48	chr6:4582400-4582600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr6:4582400-4582800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr6:4582400-4582800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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