Variant report

Variant	rs9504164
Chromosome Location	chr6:4601846-4601847
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1120117	1.00[EUR][1000 genomes]
rs17138587	1.00[EUR][1000 genomes]
rs7774045	1.00[EUR][1000 genomes]
rs9328258	1.00[EUR][1000 genomes]
rs9378892	1.00[EUR][1000 genomes]
rs9392611	1.00[EUR][1000 genomes]
rs9504144	1.00[EUR][1000 genomes]
rs9504153	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421990	chr6:4446933-4659639	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv830576	chr6:4447554-4610604	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv883415	chr6:4546491-4629654	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4599800-4604000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:4599800-4604400	Enhancers	NHEK	skin
3	chr6:4600000-4604400	Enhancers	HMEC	breast
4	chr6:4600000-4606800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:4600200-4602000	Enhancers	HSMM	muscle
6	chr6:4600200-4602000	Enhancers	NHLF	lung
7	chr6:4600200-4602200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:4600400-4604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:4601000-4607000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:4601200-4602400	Weak transcription	Placenta	Placenta
11	chr6:4601200-4603000	Weak transcription	HSMMtube	muscle
12	chr6:4601200-4603200	Weak transcription	Fetal Heart	heart
13	chr6:4601200-4603200	Weak transcription	NHDF-Ad	bronchial
14	chr6:4601200-4603200	Weak transcription	Osteobl	bone
15	chr6:4601200-4606400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:4601200-4606400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:4601200-4606400	Weak transcription	Right Ventricle	heart
18	chr6:4601400-4602800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:4601400-4603000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:4601400-4603000	Weak transcription	Esophagus	oesophagus
21	chr6:4601400-4603000	Weak transcription	NH-A	brain
22	chr6:4601400-4603800	Weak transcription	HUVEC	blood vessel
23	chr6:4601400-4607000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:4601600-4602800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:4601600-4606000	Weak transcription	Fetal Muscle Leg	muscle
26	chr6:4601600-4606800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:4601800-4603000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr6:4601800-4603000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr6:4601800-4603000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:4601800-4604000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:4601800-4607000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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