Variant report

Variant	rs9504527
Chromosome Location	chr6:5811268-5811269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13195249	1.00[ASN][1000 genomes]
rs6904513	0.82[ASN][1000 genomes]
rs6923989	0.88[ASN][1000 genomes]
rs9328332	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9502353	0.88[ASN][1000 genomes]
rs9502355	0.88[ASN][1000 genomes]
rs9504524	0.80[AMR][1000 genomes]
rs9504528	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9504535	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9504547	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970074	chr6:5804160-5811421	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5809600-5815200	Enhancers	Fetal Thymus	thymus
2	chr6:5810400-5813600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:5810400-5813600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:5810400-5813600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:5810400-5813600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:5810400-5813600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:5810600-5811800	Weak transcription	Thymus	Thymus
8	chr6:5810600-5813600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:5810600-5813600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr6:5810800-5813800	Weak transcription	Primary T cells from cord blood	blood
11	chr6:5810800-5813800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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