Variant report

Variant	rs9513231
Chromosome Location	chr13:97950019-97950020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97946659..97950744-chr13:97950983..97954750,4	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12864731	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1328834	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs16954000	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs17235614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17301362	0.88[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs35039622	0.91[ASN][1000 genomes]
rs35538229	0.91[ASN][1000 genomes]
rs56940858	0.91[ASN][1000 genomes]
rs58421118	0.94[ASN][1000 genomes]
rs61255793	0.91[ASN][1000 genomes]
rs7999038	0.91[ASN][1000 genomes]
rs9513227	0.88[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9513228	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9513229	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9513230	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9513232	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs9516891	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs9516895	0.85[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs9516896	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs9516897	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs9516898	0.91[ASN][1000 genomes]
rs9516899	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs953504	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	esv3350457	chr13:97949762-97950322	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:97933000-97953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
10	chr13:97933400-97952400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:97933600-97953600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:97934000-97954400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
14	chr13:97936800-97952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:97937000-97951400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr13:97941200-97950600	Weak transcription	Fetal Kidney	kidney
17	chr13:97942200-97950800	Weak transcription	Small Intestine	intestine
18	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
19	chr13:97943400-97953600	Weak transcription	Esophagus	oesophagus
20	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
22	chr13:97946600-97951000	Enhancers	Brain Substantia Nigra	brain
23	chr13:97946600-97951600	Enhancers	Rectal Smooth Muscle	rectum
24	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
25	chr13:97947000-97953200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr13:97947400-97954400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr13:97947800-97951000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:97947800-97953400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr13:97947800-97953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr13:97948000-97950600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:97948000-97950600	Weak transcription	Gastric	stomach
32	chr13:97948000-97950600	Weak transcription	Stomach Smooth Muscle	stomach
33	chr13:97948000-97950800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr13:97948000-97953400	Weak transcription	Spleen	Spleen
35	chr13:97948000-97954400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
37	chr13:97948200-97951000	Enhancers	Colon Smooth Muscle	Colon
38	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
40	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
41	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr13:97948800-97950600	Weak transcription	NHDF-Ad	bronchial
43	chr13:97948800-97950800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr13:97948800-97951000	Weak transcription	Placenta Amnion	Placenta Amnion
45	chr13:97948800-97951400	Genic enhancers	HUVEC	blood vessel
46	chr13:97948800-97954200	Weak transcription	Fetal Heart	heart
47	chr13:97949000-97950800	Strong transcription	Primary hematopoietic stem cells	blood
48	chr13:97949000-97950800	Weak transcription	HSMM	muscle
49	chr13:97949000-97951400	Enhancers	Skeletal Muscle Male	skeletal muscle
50	chr13:97949200-97950200	Strong transcription	K562	blood

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