Variant report

Variant	rs9513232
Chromosome Location	chr13:97958063-97958064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97957571..97959478-chr13:97960414..97962646,2	MCF-7	breast:
2	chr13:97957359..97960003-chr13:97961704..97963418,2	MCF-7	breast:
3	chr13:97957575..97959438-chr13:97964088..97966414,2	MCF-7	breast:
4	chr13:97942331..97944777-chr13:97956193..97959164,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17235614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9513231	1.00[CEU][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes]
rs9516903	0.82[ASN][1000 genomes]
rs9516905	1.00[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
4	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
5	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
6	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
8	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
11	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
12	chr13:97950200-97961000	Weak transcription	K562	blood
13	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr13:97951200-97958400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr13:97951200-97958400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr13:97951200-97958600	Weak transcription	HSMM	muscle
18	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
19	chr13:97951400-97958400	Weak transcription	Fetal Kidney	kidney
20	chr13:97951400-97958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:97951400-97960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr13:97951600-97958400	Weak transcription	NH-A	brain
23	chr13:97951600-97958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:97951600-97958600	Weak transcription	Osteobl	bone
25	chr13:97952600-97958200	Weak transcription	Aorta	Aorta
26	chr13:97953200-97959000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr13:97954000-97958400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:97954200-97958200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr13:97954200-97958200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr13:97954200-97958600	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr13:97954200-97958600	Weak transcription	Hela-S3	cervix
32	chr13:97954400-97958200	Weak transcription	Fetal Muscle Leg	muscle
33	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr13:97954800-97958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr13:97954800-97959800	Weak transcription	Primary B cells from cord blood	blood
36	chr13:97955000-97960600	Weak transcription	Primary T cells from cord blood	blood
37	chr13:97955000-97964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr13:97955200-97958200	Weak transcription	Fetal Muscle Trunk	muscle
40	chr13:97955200-97958800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr13:97955200-97959000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr13:97955200-97965600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr13:97955200-97968200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr13:97955400-97958600	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr13:97955600-97958200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr13:97955600-97958200	Weak transcription	Fetal Heart	heart
50	chr13:97955600-97958400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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