Variant report
| Variant | rs951598 |
|---|---|
| Chromosome Location | chr4:104352565-104352566 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10009242 | 0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10212959 | 0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1156669 | 0.93[ASN][1000 genomes] |
| rs11734572 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11946500 | 0.93[AFR][1000 genomes] |
| rs1356293 | 0.93[ASN][1000 genomes] |
| rs1400365 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1516740 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2138592 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28397882 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs28498687 | 0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28615487 | 0.93[AFR][1000 genomes] |
| rs28728298 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4481237 | 0.88[ASN][1000 genomes] |
| rs4699071 | 0.83[AFR][1000 genomes] |
| rs6533088 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6821137 | 0.81[ASN][1000 genomes] |
| rs6822783 | 0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6828151 | 0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6828829 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6836157 | 0.81[ASN][1000 genomes] |
| rs6855777 | 0.81[ASN][1000 genomes] |
| rs7699661 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015023 | chr4:104039145-104565217 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3348747 | chr4:104214627-104609795 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv879687 | chr4:104288620-104371785 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv830023 | chr4:104333042-104522801 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:104348800-104352800 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr4:104352200-104352800 | Enhancers | H9 Cell Line | embryonic stem cell |
