Variant report

Variant	rs28615487
Chromosome Location	chr4:104360812-104360813
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CISD2-3	chr4:104360782-104360998	XLOC_003629
2	lnc-CISD2-3	chr4:104360782-104360885	XLOC_003629
3	lnc-CISD2-3	chr4:104360782-104360898	ENSG00000248740
4	lnc-CISD2-3	chr4:104360781-104360998	NONHSAT097630

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10005997	0.93[ASN][1000 genomes]
rs10026360	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10212959	0.86[AFR][1000 genomes]
rs11946500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1512275	0.94[ASN][1000 genomes]
rs17033646	0.96[ASN][1000 genomes]
rs17220904	0.96[ASN][1000 genomes]
rs17221044	0.99[ASN][1000 genomes]
rs17286262	0.93[ASN][1000 genomes]
rs35091078	1.00[ASN][1000 genomes]
rs35478417	0.94[ASN][1000 genomes]
rs4698894	0.94[ASN][1000 genomes]
rs4699069	0.93[ASN][1000 genomes]
rs4699070	0.95[ASN][1000 genomes]
rs4699071	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57215821	0.93[ASN][1000 genomes]
rs58909279	0.94[ASN][1000 genomes]
rs62338932	0.91[ASN][1000 genomes]
rs62338936	0.94[ASN][1000 genomes]
rs6533085	0.93[ASN][1000 genomes]
rs6533088	0.86[AFR][1000 genomes]
rs6828829	0.92[AFR][1000 genomes]
rs6848028	0.93[ASN][1000 genomes]
rs6857044	0.94[ASN][1000 genomes]
rs72935453	1.00[ASN][1000 genomes]
rs7671327	0.92[ASN][1000 genomes]
rs7675703	0.93[ASN][1000 genomes]
rs951598	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3348747	chr4:104214627-104609795	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv879687	chr4:104288620-104371785	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830023	chr4:104333042-104522801	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1006780	chr4:104355981-104855401	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104360200-104364400	Weak transcription	Liver	Liver

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