Variant report
| Variant | rs35091078 |
|---|---|
| Chromosome Location | chr4:104371716-104371717 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CISD2-3 | chr4:104370248-104375195 | NONHSAT097630 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10005997 | 0.93[ASN][1000 genomes] |
| rs10026360 | 0.95[ASN][1000 genomes] |
| rs11946500 | 1.00[ASN][1000 genomes] |
| rs1512275 | 0.94[ASN][1000 genomes] |
| rs17033646 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17220904 | 0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17221044 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17286262 | 0.93[ASN][1000 genomes] |
| rs28615487 | 1.00[ASN][1000 genomes] |
| rs35478417 | 0.94[ASN][1000 genomes] |
| rs4698894 | 0.94[ASN][1000 genomes] |
| rs4699069 | 0.93[ASN][1000 genomes] |
| rs4699070 | 0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4699071 | 0.99[ASN][1000 genomes] |
| rs57215821 | 0.93[ASN][1000 genomes] |
| rs58909279 | 0.94[ASN][1000 genomes] |
| rs62338932 | 0.91[ASN][1000 genomes] |
| rs62338936 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6533085 | 0.93[ASN][1000 genomes] |
| rs6848028 | 0.93[ASN][1000 genomes] |
| rs6857044 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72935453 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7671327 | 0.92[ASN][1000 genomes] |
| rs7675703 | 0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015023 | chr4:104039145-104565217 | Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | esv3348747 | chr4:104214627-104609795 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 3 | nsv879687 | chr4:104288620-104371785 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv830023 | chr4:104333042-104522801 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 5 | nsv1006780 | chr4:104355981-104855401 | Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
