Variant report

Variant	rs17220904
Chromosome Location	chr4:104367078-104367079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:42276655..42278541-chr4:104366338..104369269,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000087152	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10005997	0.96[ASN][1000 genomes]
rs10026360	0.96[ASN][1000 genomes]
rs11946500	0.96[ASN][1000 genomes]
rs1512275	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17033646	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17221044	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17286262	0.96[ASN][1000 genomes]
rs28615487	0.96[ASN][1000 genomes]
rs35091078	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35478417	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4698894	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699069	0.96[ASN][1000 genomes]
rs4699070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699071	0.95[ASN][1000 genomes]
rs57215821	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58909279	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62338932	0.94[ASN][1000 genomes]
rs62338936	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6533085	0.96[ASN][1000 genomes]
rs6848028	0.96[ASN][1000 genomes]
rs6857044	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72935453	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7671327	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7675703	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3348747	chr4:104214627-104609795	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv879687	chr4:104288620-104371785	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv830023	chr4:104333042-104522801	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1006780	chr4:104355981-104855401	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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