Variant report

Variant	rs6533085
Chromosome Location	chr4:104281586-104281587
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10005997	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10026360	0.93[ASN][1000 genomes]
rs1156669	0.82[AFR][1000 genomes]
rs11946500	0.93[ASN][1000 genomes]
rs1356293	0.80[AFR][1000 genomes]
rs1512275	0.99[ASN][1000 genomes]
rs17033646	0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs17220904	0.96[ASN][1000 genomes]
rs17221044	0.92[ASN][1000 genomes]
rs17286262	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28615487	0.93[ASN][1000 genomes]
rs35091078	0.93[ASN][1000 genomes]
rs35478417	0.99[ASN][1000 genomes]
rs4698894	0.99[ASN][1000 genomes]
rs4699069	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699070	0.95[ASN][1000 genomes]
rs4699071	0.92[ASN][1000 genomes]
rs57215821	1.00[ASN][1000 genomes]
rs58909279	0.99[ASN][1000 genomes]
rs62338932	0.98[ASN][1000 genomes]
rs62338936	0.99[ASN][1000 genomes]
rs6848028	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6857044	0.99[ASN][1000 genomes]
rs72935453	0.93[ASN][1000 genomes]
rs7671327	0.99[ASN][1000 genomes]
rs7675703	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015023	chr4:104039145-104565217	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv2757947	chr4:104179925-104342395	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759271	chr4:104179925-104342395	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3348747	chr4:104214627-104609795	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv879686	chr4:104260725-104335667	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:104279200-104282200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr4:104279600-104282600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr4:104280000-104282000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:104280200-104282200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
5	chr4:104280400-104282200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr4:104280800-104281600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:104280800-104281600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:104280800-104282200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr4:104280800-104283800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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