Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12866697	0.81[EUR][1000 genomes]
rs12876693	0.82[EUR][1000 genomes]
rs4322517	0.81[EUR][1000 genomes]
rs4335657	0.85[EUR][1000 genomes]
rs4387474	0.85[EUR][1000 genomes]
rs4409957	0.84[EUR][1000 genomes]
rs4587819	0.85[EUR][1000 genomes]
rs4773907	0.85[EUR][1000 genomes]
rs4773912	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6492798	0.84[EUR][1000 genomes]
rs6492799	0.85[EUR][1000 genomes]
rs6492807	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7332888	0.80[EUR][1000 genomes]
rs7982563	0.85[EUR][1000 genomes]
rs7990054	0.81[EUR][1000 genomes]
rs7992297	0.85[EUR][1000 genomes]
rs7995959	0.82[EUR][1000 genomes]
rs8002639	0.81[EUR][1000 genomes]
rs9524984	0.85[EUR][1000 genomes]
rs9524993	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752652	chr13:96059024-96181597	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96150600-96166800	Weak transcription	Pancreas	Pancrea
2	chr13:96150600-96167800	Weak transcription	Esophagus	oesophagus
3	chr13:96158000-96161400	Weak transcription	NH-A	brain
4	chr13:96158000-96162000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:96158400-96161400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr13:96158600-96162000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:96158800-96161800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:96159800-96165400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:96160600-96162800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr13:96160800-96161400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr13:96160800-96161600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr13:96160800-96161600	Enhancers	HMEC	breast
13	chr13:96160800-96161600	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr13:96160800-96161600	Enhancers	NHEK	skin
15	chr13:96160800-96162800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:96160800-96162800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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