Variant report
| Variant | rs9516840 |
|---|---|
| Chromosome Location | chr13:97811721-97811722 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs16953899 | 0.88[ASN][1000 genomes] |
| rs16953900 | 0.88[ASN][1000 genomes] |
| rs4445760 | 0.88[ASN][1000 genomes] |
| rs4456365 | 0.88[ASN][1000 genomes] |
| rs59695980 | 0.85[ASN][1000 genomes] |
| rs7317886 | 0.80[EUR][1000 genomes] |
| rs7322677 | 0.88[ASN][1000 genomes] |
| rs7322973 | 0.88[ASN][1000 genomes] |
| rs7331281 | 0.85[ASN][1000 genomes] |
| rs7332127 | 0.88[ASN][1000 genomes] |
| rs7332327 | 0.80[EUR][1000 genomes] |
| rs7337250 | 0.87[ASN][1000 genomes] |
| rs7338420 | 0.88[ASN][1000 genomes] |
| rs7338629 | 0.88[ASN][1000 genomes] |
| rs7983895 | 0.87[ASN][1000 genomes] |
| rs7995449 | 0.88[ASN][1000 genomes] |
| rs7996707 | 0.84[ASN][1000 genomes] |
| rs7997574 | 0.88[ASN][1000 genomes] |
| rs9513209 | 0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9513210 | 0.88[ASN][1000 genomes] |
| rs9513211 | 0.88[ASN][1000 genomes] |
| rs9516834 | 0.80[EUR][1000 genomes] |
| rs9516841 | 0.82[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9516843 | 0.83[ASN][1000 genomes] |
| rs9516844 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1137 | chr13:97803474-97848814 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:97799200-97814800 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
