Variant report

Variant	rs7983895
Chromosome Location	chr13:97805341-97805342
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97799762..97802960-chr13:97803029..97806016,3	K562	blood:
2	chr13:97800826..97802960-chr13:97804516..97806810,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10220223	0.85[CEU][hapmap]
rs16953899	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16953900	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301278	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2282424	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4445760	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4456365	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57348783	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57806253	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59695980	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61107763	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7317886	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7317904	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7322677	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7322973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7331281	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7332127	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7332327	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7337250	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7338056	0.89[ASW][hapmap];1.00[CEU][hapmap];0.82[GIH][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7338420	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7338629	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7983632	0.83[EUR][1000 genomes]
rs7988998	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7989356	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7990235	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7990802	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7995449	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7996707	0.80[ASN][1000 genomes]
rs7997574	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8000282	0.85[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap]
rs9513209	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9513210	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9513211	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9513214	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9513215	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9513216	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9513221	0.85[CEU][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap]
rs9516832	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516834	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9516835	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9516840	0.87[ASN][1000 genomes]
rs9516841	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9516842	0.81[AMR][1000 genomes]
rs9516843	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9516844	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9516845	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516846	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516847	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516848	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516849	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516850	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516853	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9516870	0.85[CEU][hapmap];0.82[GIH][hapmap];0.91[MEX][hapmap]
rs9516871	0.85[CEU][hapmap]
rs9516872	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7983895	FARP1	cis	lymphoblastoid	seeQTL
rs7983895	GPC5	cis	parietal	SCAN
rs7983895	RAP2A	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97799200-97814800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:97804000-97805400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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