Variant report

Variant	rs10220223
Chromosome Location	chr13:97848878-97848879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97848812..97849425-chr13:97874139..97874659,2	K562	blood:
2	chr13:97772203..97773907-chr13:97847803..97849794,2	K562	blood:
3	chr13:97847095..97848966-chr13:97850546..97853460,2	K562	blood:
4	chr13:97843816..97845941-chr13:97847770..97849726,2	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1410758	0.90[ASN][1000 genomes]
rs17235537	0.90[ASN][1000 genomes]
rs17235551	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17301278	0.86[ASN][1000 genomes]
rs17301299	0.90[ASN][1000 genomes]
rs17301306	0.90[ASN][1000 genomes]
rs3825522	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4120984	0.90[ASN][1000 genomes]
rs5024203	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57348783	0.86[ASN][1000 genomes]
rs57806253	0.86[ASN][1000 genomes]
rs61107763	0.86[ASN][1000 genomes]
rs6491338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6491339	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6491341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317904	0.86[ASN][1000 genomes]
rs7338056	0.85[CEU][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7983632	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7984898	0.91[ASN][1000 genomes]
rs7988998	0.86[ASN][1000 genomes]
rs7989356	0.86[ASN][1000 genomes]
rs7990235	0.86[ASN][1000 genomes]
rs7990802	0.86[ASN][1000 genomes]
rs7991020	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7997476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000282	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9513214	0.86[ASN][1000 genomes]
rs9513215	0.86[ASN][1000 genomes]
rs9513216	0.86[ASN][1000 genomes]
rs9513219	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9516845	0.86[ASN][1000 genomes]
rs9516846	0.84[ASN][1000 genomes]
rs9516847	0.86[ASN][1000 genomes]
rs9516848	0.85[ASN][1000 genomes]
rs9516849	0.86[ASN][1000 genomes]
rs9516850	0.86[ASN][1000 genomes]
rs9516853	0.86[ASN][1000 genomes]
rs9516864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516867	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516873	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9584530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
5	chr13:97847200-97849000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:97847200-97849400	Enhancers	K562	blood
7	chr13:97847400-97858200	Weak transcription	HSMM	muscle
8	chr13:97847600-97850800	Weak transcription	Placenta	Placenta
9	chr13:97847600-97851200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:97847600-97851200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:97847800-97849400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr13:97848200-97849200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr13:97848200-97849400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:97848400-97849200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr13:97848600-97849200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr13:97848800-97849000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr13:97848800-97849200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr13:97848800-97849200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr13:97848800-97850000	Enhancers	HUVEC	blood vessel

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