Variant report

Variant	rs17301306
Chromosome Location	chr13:97858618-97858619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97857397..97860192-chr13:97862596..97864158,2	K562	blood:
2	chr13:97857393..97860192-chr13:97862596..97865751,4	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10220223	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1410758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235537	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301327	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs17301334	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs3825522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4120984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5024203	0.90[ASN][1000 genomes]
rs55845033	0.93[EUR][1000 genomes]
rs6491338	0.90[ASN][1000 genomes]
rs6491339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6491340	0.88[AFR][1000 genomes]
rs6491341	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6491342	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7338056	0.85[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap]
rs73555749	0.89[EUR][1000 genomes]
rs7983632	0.82[ASN][1000 genomes]
rs7984898	0.82[ASN][1000 genomes]
rs7990600	1.00[LWK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7991020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997476	0.87[ASN][1000 genomes]
rs8000282	0.92[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap]
rs9513219	0.90[ASN][1000 genomes]
rs9513221	0.92[CHB][hapmap];0.84[CHD][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap]
rs9516864	0.90[ASN][1000 genomes]
rs9516867	0.90[ASN][1000 genomes]
rs9516870	0.92[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[ASN][1000 genomes]
rs9516871	0.92[CHB][hapmap]
rs9516872	0.92[CHB][hapmap]
rs9584530	0.90[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97853400-97861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:97857000-97861000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:97857200-97859000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:97857600-97859000	Enhancers	NH-A	brain
5	chr13:97857600-97859200	Enhancers	Pancreatic Islets	Pancreatic Islet
6	chr13:97857800-97858800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:97857800-97858800	Enhancers	HUVEC	blood vessel
8	chr13:97857800-97859000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr13:97858000-97858800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr13:97858000-97859000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:97858200-97858800	Enhancers	Osteobl	bone
12	chr13:97858200-97859000	Enhancers	Fetal Intestine Small	intestine
13	chr13:97858200-97859400	Enhancers	Placenta Amnion	Placenta Amnion
14	chr13:97858400-97859400	Enhancers	Stomach Mucosa	stomach
15	chr13:97858400-97862600	Weak transcription	Brain Anterior Caudate	brain
16	chr13:97858600-97858800	Enhancers	A549	lung
17	chr13:97858600-97861600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr13:97858600-97862400	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr13:97858600-97863000	Weak transcription	HSMM	muscle
20	chr13:97858600-97864000	Weak transcription	HepG2	liver
21	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix

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