Variant report

Variant	rs17235537
Chromosome Location	chr13:97848633-97848634
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97772203..97773907-chr13:97847803..97849794,2	K562	blood:
2	chr13:97847095..97848966-chr13:97850546..97853460,2	K562	blood:
3	chr13:97843816..97845941-chr13:97847770..97849726,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10220223	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1410758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301327	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17301334	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs3825522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4120984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5024203	0.90[ASN][1000 genomes]
rs55845033	0.96[EUR][1000 genomes]
rs6491338	0.90[ASN][1000 genomes]
rs6491339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6491340	0.88[AFR][1000 genomes]
rs6491341	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6491342	0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7338056	0.89[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap]
rs73555749	0.92[EUR][1000 genomes]
rs7983632	0.82[ASN][1000 genomes]
rs7984898	0.82[ASN][1000 genomes]
rs7990600	1.00[LWK][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes]
rs7991020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997476	0.87[ASN][1000 genomes]
rs8000282	0.92[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap]
rs9513219	0.90[ASN][1000 genomes]
rs9513221	0.92[CHB][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.91[MEX][hapmap]
rs9516864	0.90[ASN][1000 genomes]
rs9516867	0.90[ASN][1000 genomes]
rs9516870	0.92[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.90[ASN][1000 genomes]
rs9516871	0.92[CHB][hapmap]
rs9516872	0.92[CHB][hapmap]
rs9584530	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
5	chr13:97847200-97848800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr13:97847200-97849000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:97847200-97849400	Enhancers	K562	blood
8	chr13:97847400-97848800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr13:97847400-97858200	Weak transcription	HSMM	muscle
10	chr13:97847600-97850800	Weak transcription	Placenta	Placenta
11	chr13:97847600-97851200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:97847600-97851200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:97847800-97848800	Weak transcription	HUVEC	blood vessel
14	chr13:97847800-97849400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:97848200-97849200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr13:97848200-97849400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:97848400-97849200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr13:97848600-97849200	Enhancers	HUES6 Cell Line	embryonic stem cell

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