The 2.0 version of rSNPBase

Variant report

Variant rs55845033
Chromosome Location chr13:97884167-97884168
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:97876600-97893800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr13:97878200-97896600 Weak transcription HSMMtube muscle
3 chr13:97879600-97886600 Weak transcription Primary monocytes fromperipheralblood blood
4 chr13:97879800-97885000 Weak transcription Fetal Brain Male brain
5 chr13:97879800-97886200 Genic enhancers HepG2 liver
6 chr13:97879800-97887800 Enhancers Right Atrium heart
7 chr13:97879800-97893200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr13:97880000-97885600 Weak transcription Fetal Brain Female brain
9 chr13:97880200-97884800 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr13:97880200-97886200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
11 chr13:97880200-97886200 Enhancers Fetal Lung lung
12 chr13:97880200-97886600 Weak transcription Esophagus oesophagus
13 chr13:97880400-97884800 Weak transcription Primary T helper naive cells fromperipheralblood blood
14 chr13:97880400-97884800 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr13:97880400-97885800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr13:97880400-97885800 Weak transcription Fetal Intestine Small intestine
17 chr13:97880400-97886000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
18 chr13:97880400-97886200 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr13:97880400-97886200 Enhancers K562 blood
20 chr13:97880400-97887200 Weak transcription Fetal Kidney kidney
21 chr13:97880400-97888800 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr13:97880400-97899400 Weak transcription Primary hematopoietic stem cells short term culture blood
23 chr13:97880600-97885800 Weak transcription Fetal Thymus thymus
24 chr13:97880600-97886000 Weak transcription Fetal Intestine Large intestine
25 chr13:97880600-97886400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
26 chr13:97880600-97890600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
27 chr13:97880600-97890600 Weak transcription GM12878-XiMat blood
28 chr13:97881200-97884800 Enhancers Brain Anterior Caudate brain
29 chr13:97881200-97886000 Enhancers Colon Smooth Muscle Colon
30 chr13:97881200-97889800 Weak transcription Primary hematopoietic stem cells blood
31 chr13:97881400-97884200 Enhancers Psoas Muscle Psoas
32 chr13:97881400-97887000 Genic enhancers Breast Myoepithelial Primary Cells Breast
33 chr13:97881800-97888000 Weak transcription NHEK skin
34 chr13:97881800-97890000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
35 chr13:97881800-97891400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr13:97882000-97885000 Enhancers Right Ventricle heart
37 chr13:97882000-97886400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr13:97882000-97890200 Weak transcription Primary T helper naive cells from peripheral blood blood
39 chr13:97882000-97893200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr13:97882200-97885800 Weak transcription Small Intestine intestine
41 chr13:97882200-97891800 Weak transcription HMEC breast
42 chr13:97882600-97884600 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
43 chr13:97882600-97884600 Strong transcription Rectal Mucosa Donor 29 rectum
44 chr13:97882600-97884800 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
45 chr13:97882600-97885800 Weak transcription Placenta Placenta
46 chr13:97882800-97884400 Weak transcription Stomach Mucosa stomach
47 chr13:97882800-97892000 Strong transcription Primary B cells from cord blood blood
48 chr13:97883000-97888200 Strong transcription Primary B cells from peripheral blood blood
49 chr13:97883200-97884600 Strong transcription Primary T helper cells fromperipheralblood blood
50 chr13:97883200-97885200 Strong transcription Primary T regulatory cells fromperipheralblood blood

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Last update: Aug 31, 2015