Variant report

Variant	rs73555754
Chromosome Location	chr13:97895582-97895583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:97878961..97881885-chr13:97894343..97897721,4	K562	blood:
2	chr13:97892207..97896967-chr13:97905810..97911512,6	K562	blood:
3	chr13:97895427..97898016-chr13:98009372..98010999,2	MCF-7	breast:
4	chr13:97892207..97897500-chr13:97905924..97911512,9	K562	blood:
5	chr13:97889708..97892403-chr13:97893005..97895735,2	K562	blood:
6	chr13:97877011..97878623-chr13:97895096..97896723,2	K562	blood:
7	chr13:97889990..97892633-chr13:97895348..97898015,2	MCF-7	breast:
8	chr13:97891761..97895595-chr13:97895855..97899530,6	K562	blood:
9	chr13:97890017..97893830-chr13:97894235..97897947,5	K562	blood:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12323277	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235593	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17301327	1.00[AFR][1000 genomes]
rs17301334	1.00[AFR][1000 genomes]
rs17301341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55845033	0.81[AFR][1000 genomes]
rs60259333	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60830598	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73555749	1.00[AFR][1000 genomes]
rs73555756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73555760	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73555771	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9584535	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
2	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:97884600-97895600	Weak transcription	HSMM	muscle
4	chr13:97884600-97896000	Enhancers	Psoas Muscle	Psoas
5	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
6	chr13:97887200-97895800	Enhancers	Left Ventricle	heart
7	chr13:97887200-97900000	Weak transcription	Hela-S3	cervix
8	chr13:97887400-97896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:97887600-97896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:97888200-97895800	Enhancers	Right Atrium	heart
11	chr13:97888200-97896400	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr13:97888600-97895600	Weak transcription	Colonic Mucosa	Colon
13	chr13:97888600-97896000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr13:97888600-97896000	Enhancers	Right Ventricle	heart
15	chr13:97888600-97900400	Enhancers	Rectal Smooth Muscle	rectum
16	chr13:97888600-97901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:97890200-97898000	Enhancers	Duodenum Mucosa	Duodenum
18	chr13:97890400-97898800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:97891000-97895600	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:97891200-97909200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr13:97891200-97909400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:97891400-97898600	Enhancers	Adipose Nuclei	Adipose
23	chr13:97891400-97901600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:97891800-97900200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr13:97891800-97903200	Enhancers	Liver	Liver
26	chr13:97892000-97895600	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr13:97892000-97897800	Enhancers	Ovary	ovary
28	chr13:97892000-97902400	Weak transcription	NH-A	brain
29	chr13:97892200-97895600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr13:97892200-97895600	Weak transcription	NHLF	lung
31	chr13:97892200-97895800	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr13:97892200-97896000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr13:97892200-97896000	Enhancers	A549	lung
34	chr13:97892400-97895800	Enhancers	Pancreas	Pancrea
35	chr13:97892600-97896000	Weak transcription	HMEC	breast
36	chr13:97892600-97900400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr13:97892600-97908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr13:97892800-97896400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr13:97892800-97909200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr13:97893000-97896600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr13:97893000-97906600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr13:97893200-97895600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr13:97893200-97895800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr13:97893400-97895600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:97893400-97895600	Weak transcription	NHDF-Ad	bronchial
46	chr13:97893400-97896600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr13:97893600-97895800	Weak transcription	Fetal Kidney	kidney
48	chr13:97893600-97899000	Enhancers	Fetal Heart	heart
49	chr13:97893800-97895600	Strong transcription	Fetal Stomach	stomach
50	chr13:97893800-97895800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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