Variant report

Variant	rs60259333
Chromosome Location	chr13:97900611-97900612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97900200..97903330-chr13:97905228..97908336,3	MCF-7	breast:
2	chr13:97900118..97904001-chr13:97905452..97910002,7	K562	blood:
3	chr13:97898743..97903163-chr13:97911001..97914610,5	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12323277	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17235593	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17301341	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60830598	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73555754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73555760	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73555771	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9584535	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
2	chr13:97888600-97901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:97891200-97909200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:97891200-97909400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:97891400-97901600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr13:97891800-97903200	Enhancers	Liver	Liver
7	chr13:97892000-97902400	Weak transcription	NH-A	brain
8	chr13:97892600-97908800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr13:97892800-97909200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr13:97893000-97906600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr13:97894000-97901400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr13:97894200-97901400	Weak transcription	NHEK	skin
13	chr13:97894200-97903000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr13:97894400-97901800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:97894400-97901800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr13:97894400-97902400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr13:97894400-97902600	Weak transcription	Primary T cells from cord blood	blood
18	chr13:97894400-97903000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr13:97894400-97903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:97894600-97908600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr13:97894600-97909800	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr13:97895800-97900800	Weak transcription	Lung	lung
23	chr13:97895800-97906200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:97895800-97906800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr13:97895800-97907000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr13:97895800-97907000	Weak transcription	Primary B cells from cord blood	blood
27	chr13:97895800-97907000	Weak transcription	Esophagus	oesophagus
28	chr13:97895800-97907200	Weak transcription	Placenta	Placenta
29	chr13:97895800-97909600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr13:97896000-97903000	Enhancers	Brain Substantia Nigra	brain
31	chr13:97896600-97901400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr13:97896600-97902200	Weak transcription	Fetal Brain Male	brain
33	chr13:97896800-97900800	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:97896800-97901400	Weak transcription	Osteobl	bone
35	chr13:97896800-97903400	Enhancers	Brain Angular Gyrus	brain
36	chr13:97897000-97901000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr13:97897600-97900800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:97897600-97902400	Weak transcription	HSMM	muscle
39	chr13:97897600-97902800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr13:97897800-97901400	Weak transcription	Fetal Kidney	kidney
41	chr13:97897800-97901400	Weak transcription	Fetal Stomach	stomach
42	chr13:97897800-97901400	Weak transcription	K562	blood
43	chr13:97897800-97901800	Weak transcription	Aorta	Aorta
44	chr13:97897800-97902000	Weak transcription	Stomach Mucosa	stomach
45	chr13:97897800-97903000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:97897800-97903000	Weak transcription	HSMMtube	muscle
47	chr13:97897800-97906600	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr13:97897800-97907000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr13:97897800-97907200	Weak transcription	Fetal Muscle Leg	muscle
50	chr13:97898000-97902600	Weak transcription	Duodenum Mucosa	Duodenum

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