Variant report

Variant	rs17301341
Chromosome Location	chr13:97891294-97891295
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:97889990..97892633-chr13:97895348..97898015,2	MCF-7	breast:
2	chr13:97886043..97888309-chr13:97889917..97892337,2	MCF-7	breast:
3	chr13:97890017..97893830-chr13:97894235..97897947,5	K562	blood:
4	chr13:97889708..97892403-chr13:97893005..97895735,2	K562	blood:
5	chr13:97883639..97888223-chr13:97888845..97894728,6	K562	blood:
6	chr13:97885101..97888223-chr13:97890978..97895082,5	K562	blood:
7	chr13:97877941..97881571-chr13:97888096..97891970,4	K562	blood:
8	chr13:97880037..97884832-chr13:97887961..97893299,6	MCF-7	breast:

No data

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12323277	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17235593	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17301327	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs17301334	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28621077	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs55845033	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs60259333	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60830598	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6491339	1.00[CEU][hapmap]
rs73555749	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs73555754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73555756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73555759	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73555760	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73555771	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9584535	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97876600-97893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
3	chr13:97879800-97893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:97881800-97891400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:97882000-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:97882200-97891800	Weak transcription	HMEC	breast
8	chr13:97882800-97892000	Strong transcription	Primary B cells from cord blood	blood
9	chr13:97883600-97891800	Genic enhancers	Liver	Liver
10	chr13:97884200-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr13:97884400-97893000	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr13:97884600-97895600	Weak transcription	HSMM	muscle
13	chr13:97884600-97896000	Enhancers	Psoas Muscle	Psoas
14	chr13:97885000-97891400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:97885200-97893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr13:97885800-97893600	Weak transcription	Thymus	Thymus
17	chr13:97886200-97891400	Genic enhancers	K562	blood
18	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
19	chr13:97886400-97892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:97887200-97893800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr13:97887200-97893800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr13:97887200-97895800	Enhancers	Left Ventricle	heart
23	chr13:97887200-97900000	Weak transcription	Hela-S3	cervix
24	chr13:97887400-97891800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:97887400-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr13:97887400-97896200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr13:97887600-97894200	Enhancers	Small Intestine	intestine
28	chr13:97887600-97896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr13:97887800-97893400	Weak transcription	Primary T cells from cord blood	blood
30	chr13:97888000-97893000	Enhancers	Brain Cingulate Gyrus	brain
31	chr13:97888200-97891400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr13:97888200-97894400	Enhancers	Brain Substantia Nigra	brain
33	chr13:97888200-97895800	Enhancers	Right Atrium	heart
34	chr13:97888200-97896400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr13:97888600-97891400	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr13:97888600-97892200	Weak transcription	Fetal Brain Male	brain
37	chr13:97888600-97894400	Enhancers	Brain Angular Gyrus	brain
38	chr13:97888600-97894400	Enhancers	Brain Inferior Temporal Lobe	brain
39	chr13:97888600-97895400	Enhancers	Colon Smooth Muscle	Colon
40	chr13:97888600-97895600	Weak transcription	Colonic Mucosa	Colon
41	chr13:97888600-97896000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr13:97888600-97896000	Enhancers	Right Ventricle	heart
43	chr13:97888600-97900400	Enhancers	Rectal Smooth Muscle	rectum
44	chr13:97888600-97901400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr13:97888800-97894400	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr13:97889400-97891600	Enhancers	Primary T killer memory cells from peripheral blood	blood
47	chr13:97889400-97892000	Weak transcription	Fetal Intestine Large	intestine
48	chr13:97889400-97893000	Weak transcription	Fetal Kidney	kidney
49	chr13:97889400-97894400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr13:97889600-97891800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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