Variant report

Variant	rs73555749
Chromosome Location	chr13:97888731-97888732
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97885894..97888799-chr13:97909158..97911920,2	K562	blood:
2	chr13:97881339..97883391-chr13:97887909..97890406,2	K562	blood:
3	chr13:97887806..97890329-chr13:98086056..98087652,2	K562	blood:
4	chr13:97877941..97881571-chr13:97888096..97891970,4	K562	blood:
5	chr13:97880037..97884832-chr13:97887961..97893299,6	MCF-7	breast:
6	chr13:97887496..97890340-chr13:97991017..97992548,2	K562	blood:

Variant related genes	Relation type
ENSG00000125249	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1410758	0.92[EUR][1000 genomes]
rs17235537	0.92[EUR][1000 genomes]
rs17235551	0.92[EUR][1000 genomes]
rs17301299	0.92[EUR][1000 genomes]
rs17301306	0.89[EUR][1000 genomes]
rs17301327	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301334	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301341	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3825522	0.86[EUR][1000 genomes]
rs4120984	0.92[EUR][1000 genomes]
rs55845033	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60830598	0.81[AFR][1000 genomes]
rs6491339	0.92[EUR][1000 genomes]
rs73555754	1.00[AFR][1000 genomes]
rs73555756	1.00[AFR][1000 genomes]
rs73555760	0.81[AFR][1000 genomes]
rs7991020	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97876600-97893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97878200-97896600	Weak transcription	HSMMtube	muscle
3	chr13:97879800-97893200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:97880400-97888800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr13:97880400-97899400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:97880600-97890600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:97880600-97890600	Weak transcription	GM12878-XiMat	blood
8	chr13:97881200-97889800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:97881800-97890000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:97881800-97891400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:97882000-97890200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr13:97882000-97893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:97882200-97891800	Weak transcription	HMEC	breast
14	chr13:97882800-97892000	Strong transcription	Primary B cells from cord blood	blood
15	chr13:97883200-97890800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr13:97883600-97891800	Genic enhancers	Liver	Liver
17	chr13:97884000-97889400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr13:97884000-97890400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:97884200-97891200	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr13:97884200-97893800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr13:97884400-97893000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr13:97884600-97895600	Weak transcription	HSMM	muscle
23	chr13:97884600-97896000	Enhancers	Psoas Muscle	Psoas
24	chr13:97884800-97889000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr13:97885000-97891400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr13:97885200-97890000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr13:97885200-97891200	Weak transcription	NH-A	brain
28	chr13:97885200-97893400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr13:97885800-97891200	Enhancers	Pancreas	Pancrea
30	chr13:97885800-97893600	Weak transcription	Thymus	Thymus
31	chr13:97886200-97888800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr13:97886200-97891400	Genic enhancers	K562	blood
33	chr13:97886200-97907200	Weak transcription	Fetal Thymus	thymus
34	chr13:97886400-97892200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr13:97886600-97890800	Genic enhancers	HepG2	liver
36	chr13:97887000-97889400	Enhancers	A549	lung
37	chr13:97887200-97888800	Enhancers	Fetal Intestine Large	intestine
38	chr13:97887200-97889400	Enhancers	Fetal Kidney	kidney
39	chr13:97887200-97889800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr13:97887200-97889800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr13:97887200-97889800	Enhancers	Fetal Intestine Small	intestine
42	chr13:97887200-97893800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr13:97887200-97893800	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr13:97887200-97895800	Enhancers	Left Ventricle	heart
45	chr13:97887200-97900000	Weak transcription	Hela-S3	cervix
46	chr13:97887400-97889200	Weak transcription	Placenta	Placenta
47	chr13:97887400-97889400	Enhancers	Ovary	ovary
48	chr13:97887400-97890200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr13:97887400-97890200	Enhancers	Fetal Lung	lung
50	chr13:97887400-97890600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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