Variant report

Variant	rs17235551
Chromosome Location	chr13:97866928-97866929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97863456..97868216-chr13:97870122..97874469,4	MCF-7	breast:
2	chr13:97866726..97868558-chr13:97872122..97874471,2	K562	blood:
3	chr13:97761870..97762593-chr13:97866616..97867485,2	MCF-7	breast:
4	chr13:97862725..97864996-chr13:97866884..97868845,2	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10220223	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1410758	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17235537	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301306	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301327	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17301334	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs3825522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4120984	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5024203	0.89[ASN][1000 genomes]
rs55845033	0.96[EUR][1000 genomes]
rs6491338	0.89[ASN][1000 genomes]
rs6491339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6491340	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6491341	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6491342	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7324333	0.83[YRI][hapmap]
rs7338056	0.92[JPT][hapmap]
rs73555749	0.92[EUR][1000 genomes]
rs7983632	0.81[ASN][1000 genomes]
rs7984898	0.81[ASN][1000 genomes]
rs7990600	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs7991020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7997476	0.86[ASN][1000 genomes]
rs8000282	0.92[CHB][hapmap]
rs9513219	0.89[ASN][1000 genomes]
rs9513221	0.92[CHB][hapmap]
rs9516864	0.89[ASN][1000 genomes]
rs9516867	0.89[ASN][1000 genomes]
rs9516870	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9516871	0.93[CHB][hapmap]
rs9516872	0.93[CHB][hapmap]
rs9584530	0.89[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
2	chr13:97863600-97867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97863800-97867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr13:97864600-97872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:97864600-97873800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:97865000-97867000	Weak transcription	Dnd41	blood
8	chr13:97865000-97867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:97865000-97867200	Weak transcription	Placenta	Placenta
10	chr13:97865200-97867000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr13:97865200-97867000	Weak transcription	HepG2	liver
12	chr13:97865200-97871000	Weak transcription	Brain Substantia Nigra	brain
13	chr13:97865200-97872200	Weak transcription	Stomach Mucosa	stomach
14	chr13:97865400-97867000	Weak transcription	K562	blood
15	chr13:97865400-97867200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr13:97865400-97867200	Weak transcription	GM12878-XiMat	blood
17	chr13:97865400-97867400	Weak transcription	Brain Hippocampus Middle	brain
18	chr13:97865400-97872400	Weak transcription	Brain Anterior Caudate	brain
19	chr13:97865400-97872600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr13:97865600-97874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr13:97866200-97867200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:97866200-97867400	Enhancers	Primary T cells from cord blood	blood
23	chr13:97866600-97867600	Enhancers	Primary T cells fromperipheralblood	blood
24	chr13:97866600-97868400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr13:97866600-97868600	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr13:97866800-97867800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr13:97866800-97867800	Enhancers	Fetal Thymus	thymus
28	chr13:97866800-97867800	Enhancers	Thymus	Thymus
29	chr13:97866800-97868000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr13:97866800-97868200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr13:97866800-97868400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr13:97866800-97868400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr13:97866800-97868400	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr13:97866800-97868600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr13:97866800-97868600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr13:97866800-97868600	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr13:97866800-97868800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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