Variant report

Variant	rs7984898
Chromosome Location	chr13:97846080-97846081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97844488..97847084-chr13:97911183..97912981,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10220223	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1410758	0.82[ASN][1000 genomes]
rs17235537	0.82[ASN][1000 genomes]
rs17235551	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17301299	0.82[ASN][1000 genomes]
rs17301306	0.82[ASN][1000 genomes]
rs3825522	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs4120984	0.82[ASN][1000 genomes]
rs5024203	0.91[ASN][1000 genomes]
rs6491338	0.91[ASN][1000 genomes]
rs6491339	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs6491341	0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7338056	0.84[CHD][hapmap];0.87[GIH][hapmap];0.92[JPT][hapmap]
rs7983632	1.00[ASN][1000 genomes]
rs7991020	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7997476	0.87[ASN][1000 genomes]
rs8000282	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs9513219	0.91[ASN][1000 genomes]
rs9513221	0.93[CHB][hapmap];0.89[CHD][hapmap]
rs9516861	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9516864	0.91[ASN][1000 genomes]
rs9516867	0.91[ASN][1000 genomes]
rs9516870	0.93[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9516871	0.93[CHB][hapmap]
rs9516872	0.93[CHB][hapmap]
rs9584530	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7984898	TGDS	cis	parietal	SCAN
rs7984898	RAP2A	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97841000-97846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr13:97842000-97846400	Enhancers	K562	blood
3	chr13:97842400-97846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr13:97842800-97847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr13:97843200-97847200	Enhancers	Stomach Mucosa	stomach
7	chr13:97843400-97847600	Enhancers	Placenta	Placenta
8	chr13:97843600-97847200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:97843800-97846600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:97844000-97847600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr13:97844200-97846200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:97844400-97846600	Weak transcription	Brain Substantia Nigra	brain
14	chr13:97844400-97846600	Weak transcription	Fetal Muscle Leg	muscle
15	chr13:97844400-97846800	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:97844800-97846600	Weak transcription	Brain Anterior Caudate	brain
17	chr13:97844800-97846800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:97845200-97847800	Enhancers	HMEC	breast
19	chr13:97845200-97847800	Enhancers	HUVEC	blood vessel
20	chr13:97845400-97846200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:97845400-97847200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr13:97845800-97847400	Enhancers	HSMMtube	muscle
23	chr13:97845800-97847600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr13:97845800-97847600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr13:97845800-97847800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr13:97846000-97846200	Enhancers	Duodenum Mucosa	Duodenum
27	chr13:97846000-97847400	Enhancers	HSMM	muscle
28	chr13:97846000-97847600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr13:97846000-97847600	Enhancers	NHEK	skin

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