Variant report

Variant	rs4120984
Chromosome Location	chr13:97847442-97847443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97847095..97848966-chr13:97850546..97853460,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10220223	0.90[ASN][1000 genomes]
rs1410758	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17235551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301299	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301327	0.96[EUR][1000 genomes]
rs17301334	0.96[EUR][1000 genomes]
rs3825522	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5024203	0.90[ASN][1000 genomes]
rs55845033	0.96[EUR][1000 genomes]
rs6491338	0.90[ASN][1000 genomes]
rs6491339	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6491340	0.88[AFR][1000 genomes]
rs6491341	0.90[ASN][1000 genomes]
rs6491342	0.88[AFR][1000 genomes]
rs73555749	0.92[EUR][1000 genomes]
rs7983632	0.82[ASN][1000 genomes]
rs7984898	0.82[ASN][1000 genomes]
rs7990600	0.88[AFR][1000 genomes]
rs7991020	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7997476	0.87[ASN][1000 genomes]
rs9513219	0.90[ASN][1000 genomes]
rs9516864	0.90[ASN][1000 genomes]
rs9516867	0.90[ASN][1000 genomes]
rs9516870	0.90[ASN][1000 genomes]
rs9584530	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97842800-97847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr13:97843400-97847600	Enhancers	Placenta	Placenta
4	chr13:97844000-97847600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:97845200-97847800	Enhancers	HMEC	breast
7	chr13:97845200-97847800	Enhancers	HUVEC	blood vessel
8	chr13:97845800-97847600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr13:97845800-97847600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:97845800-97847800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr13:97846000-97847600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr13:97846000-97847600	Enhancers	NHEK	skin
13	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:97846400-97847600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr13:97846400-97847600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
17	chr13:97846600-97847600	Enhancers	NHLF	lung
18	chr13:97846600-97847800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr13:97846800-97847600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr13:97847200-97848000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:97847200-97848400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:97847200-97848800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr13:97847200-97849000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr13:97847200-97849400	Enhancers	K562	blood
25	chr13:97847400-97848600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:97847400-97848800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr13:97847400-97858200	Weak transcription	HSMM	muscle

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