Variant report

Variant	rs6491338
Chromosome Location	chr13:97863296-97863297
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97861431..97863412-chr13:97874810..97876827,2	K562	blood:
2	chr13:97854002..97856738-chr13:97861937..97864519,2	K562	blood:
3	chr13:97857397..97860192-chr13:97862596..97864158,2	K562	blood:
4	chr13:97857393..97860192-chr13:97862596..97865751,4	K562	blood:
5	chr13:97862725..97864996-chr13:97866884..97868845,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10220223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1410758	0.90[ASN][1000 genomes]
rs17235537	0.90[ASN][1000 genomes]
rs17235551	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17301278	0.86[ASN][1000 genomes]
rs17301299	0.90[ASN][1000 genomes]
rs17301306	0.90[ASN][1000 genomes]
rs3825522	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4120984	0.90[ASN][1000 genomes]
rs5024203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57348783	0.86[ASN][1000 genomes]
rs57806253	0.86[ASN][1000 genomes]
rs61107763	0.86[ASN][1000 genomes]
rs6491339	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6491341	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317904	0.86[ASN][1000 genomes]
rs7338056	0.85[CEU][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs7983632	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7984898	0.91[ASN][1000 genomes]
rs7988998	0.86[ASN][1000 genomes]
rs7989356	0.86[ASN][1000 genomes]
rs7990235	0.86[ASN][1000 genomes]
rs7990802	0.86[ASN][1000 genomes]
rs7991020	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7997476	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8000282	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9513214	0.86[ASN][1000 genomes]
rs9513215	0.86[ASN][1000 genomes]
rs9513216	0.86[ASN][1000 genomes]
rs9513219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9516845	0.86[ASN][1000 genomes]
rs9516846	0.84[ASN][1000 genomes]
rs9516847	0.86[ASN][1000 genomes]
rs9516848	0.85[ASN][1000 genomes]
rs9516849	0.86[ASN][1000 genomes]
rs9516850	0.86[ASN][1000 genomes]
rs9516853	0.86[ASN][1000 genomes]
rs9516864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516872	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516873	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9584530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97864000	Weak transcription	HepG2	liver
2	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
3	chr13:97859000-97863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:97859200-97863600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr13:97859400-97864400	Weak transcription	Stomach Mucosa	stomach
6	chr13:97859800-97863600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr13:97860400-97864200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr13:97860400-97864200	Weak transcription	Fetal Intestine Small	intestine
9	chr13:97861000-97863800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr13:97861400-97865000	Enhancers	Dnd41	blood
11	chr13:97861600-97863800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr13:97861600-97863800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr13:97861600-97863800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr13:97861600-97863800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr13:97861600-97863800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr13:97861600-97863800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr13:97861600-97865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:97861600-97865400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr13:97861800-97863600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:97862000-97863600	Enhancers	Primary T cells fromperipheralblood	blood
21	chr13:97862000-97863800	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr13:97862000-97863800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr13:97862000-97864000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr13:97862000-97865000	Enhancers	Fetal Thymus	thymus
25	chr13:97862000-97865400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr13:97862000-97865600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr13:97862200-97863600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr13:97862200-97863600	Enhancers	Thymus	Thymus
29	chr13:97862200-97864000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr13:97862400-97865400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr13:97862800-97863400	Enhancers	Primary T cells from cord blood	blood
32	chr13:97862800-97865200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr13:97862800-97865200	Enhancers	HMEC	breast
34	chr13:97863000-97863600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
35	chr13:97863000-97863800	Enhancers	Brain Angular Gyrus	brain
36	chr13:97863000-97863800	Enhancers	Placenta	Placenta
37	chr13:97863000-97863800	Enhancers	NH-A	brain
38	chr13:97863000-97864000	Enhancers	HSMM	muscle
39	chr13:97863000-97864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr13:97863000-97864800	Enhancers	Placenta Amnion	Placenta Amnion
41	chr13:97863000-97865000	Enhancers	Brain Cingulate Gyrus	brain
42	chr13:97863000-97865000	Enhancers	Ovary	ovary
43	chr13:97863000-97865400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr13:97863000-97865400	Enhancers	Brain Hippocampus Middle	brain
45	chr13:97863200-97863400	Enhancers	Brain Anterior Caudate	brain
46	chr13:97863200-97863400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
47	chr13:97863200-97864400	Weak transcription	HSMMtube	muscle
48	chr13:97863200-97865000	Weak transcription	GM12878-XiMat	blood
49	chr13:97863200-97865200	Enhancers	Brain Substantia Nigra	brain

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