Variant report

Variant	rs9516871
Chromosome Location	chr13:97866456-97866457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97863456..97868216-chr13:97870122..97874469,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10220223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17235551	0.93[CHB][hapmap]
rs3825522	0.93[CHB][hapmap]
rs5024203	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6491338	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6491339	0.93[CHB][hapmap]
rs6491341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7338056	0.85[CEU][hapmap]
rs7983632	0.87[AMR][1000 genomes]
rs7991020	0.93[CHB][hapmap]
rs7997476	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8000282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513219	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9513221	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516861	0.99[ASN][1000 genomes]
rs9516864	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516867	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516873	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9584530	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
2	chr13:97863600-97866600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr13:97863600-97866800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:97863600-97866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr13:97863600-97867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr13:97863800-97866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:97863800-97866600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr13:97863800-97866800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:97863800-97866800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr13:97863800-97866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr13:97863800-97866800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr13:97863800-97867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr13:97864000-97866800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr13:97864600-97872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:97864600-97873800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr13:97865000-97866800	Weak transcription	Fetal Thymus	thymus
20	chr13:97865000-97867000	Weak transcription	Dnd41	blood
21	chr13:97865000-97867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr13:97865000-97867200	Weak transcription	Placenta	Placenta
23	chr13:97865200-97867000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr13:97865200-97867000	Weak transcription	HepG2	liver
25	chr13:97865200-97871000	Weak transcription	Brain Substantia Nigra	brain
26	chr13:97865200-97872200	Weak transcription	Stomach Mucosa	stomach
27	chr13:97865400-97867000	Weak transcription	K562	blood
28	chr13:97865400-97867200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr13:97865400-97867200	Weak transcription	GM12878-XiMat	blood
30	chr13:97865400-97867400	Weak transcription	Brain Hippocampus Middle	brain
31	chr13:97865400-97872400	Weak transcription	Brain Anterior Caudate	brain
32	chr13:97865400-97872600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr13:97865600-97874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr13:97866200-97867200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr13:97866200-97867400	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links