Variant report

Variant	rs3825522
Chromosome Location	chr13:97873413-97873414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RFX5	chr13:97873256-97877479	SK-N-SH	brain:	n/a	chr13:97877369-97877378 chr13:97877368-97877383 chr13:97875204-97875212 chr13:97877368-97877383 chr13:97877366-97877380
2	MXI1	chr13:97873284-97878459	SK-N-SH	brain:	n/a	chr13:97877369-97877384 chr13:97877838-97877847
3	NFYB	chr13:97873388-97873526	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97863320..97866050-chr13:97870131..97873643,3	K562	blood:

Variant related genes	Relation type
MBNL2	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10220223	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1410758	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17235537	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17235551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301299	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301306	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17301327	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17301334	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs4120984	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5024203	0.89[ASN][1000 genomes]
rs55845033	0.89[EUR][1000 genomes]
rs6491338	0.89[ASN][1000 genomes]
rs6491339	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6491341	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7338056	0.92[JPT][hapmap]
rs73555749	0.86[EUR][1000 genomes]
rs7983632	0.81[ASN][1000 genomes]
rs7984898	0.81[ASN][1000 genomes]
rs7991020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7997476	0.86[ASN][1000 genomes]
rs8000282	0.92[CHB][hapmap]
rs9513219	0.89[ASN][1000 genomes]
rs9513221	0.92[CHB][hapmap]
rs9516864	0.89[ASN][1000 genomes]
rs9516867	0.89[ASN][1000 genomes]
rs9516870	0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9516871	0.93[CHB][hapmap]
rs9516872	0.93[CHB][hapmap]
rs9584530	0.89[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97864600-97873800	Weak transcription	Duodenum Mucosa	Duodenum
2	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr13:97865600-97874200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr13:97867600-97874200	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr13:97867800-97874200	Weak transcription	Fetal Thymus	thymus
6	chr13:97868000-97873800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr13:97868200-97874000	Weak transcription	GM12878-XiMat	blood
8	chr13:97868200-97874200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:97868400-97873600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr13:97868400-97873800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr13:97868400-97873800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr13:97868400-97873800	Weak transcription	Dnd41	blood
13	chr13:97868600-97873800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr13:97868600-97874000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:97868600-97874000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr13:97868600-97874000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:97868800-97873800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr13:97868800-97874000	Weak transcription	Primary T cells from cord blood	blood
19	chr13:97868800-97874200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:97871000-97873800	Enhancers	Brain Substantia Nigra	brain
21	chr13:97871400-97873800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr13:97871400-97874000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr13:97871800-97874200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr13:97871800-97874200	Weak transcription	Psoas Muscle	Psoas
25	chr13:97872000-97873800	Enhancers	HepG2	liver
26	chr13:97872000-97874000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr13:97872000-97874200	Weak transcription	Fetal Intestine Small	intestine
28	chr13:97872400-97873600	Enhancers	HMEC	breast
29	chr13:97872400-97873800	Enhancers	NHEK	skin
30	chr13:97872400-97874000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr13:97872600-97873600	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr13:97872600-97873800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr13:97872800-97873600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr13:97872800-97873800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:97873000-97873800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:97873000-97873800	Weak transcription	Brain Hippocampus Middle	brain
37	chr13:97873000-97873800	Enhancers	Fetal Kidney	kidney
38	chr13:97873000-97873800	Weak transcription	Small Intestine	intestine
39	chr13:97873000-97873800	Weak transcription	K562	blood
40	chr13:97873200-97873600	Weak transcription	Liver	Liver
41	chr13:97873200-97873600	Weak transcription	Brain Anterior Caudate	brain
42	chr13:97873200-97873600	Weak transcription	Stomach Mucosa	stomach
43	chr13:97873200-97874000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr13:97873400-97873800	Weak transcription	Brain Cingulate Gyrus	brain
45	chr13:97873400-97874000	Enhancers	Brain Germinal Matrix	brain
46	chr13:97873400-97877600	Active TSS	Brain Angular Gyrus	brain

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