Variant report

Variant	rs9513216
Chromosome Location	chr13:97841220-97841221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10220223	0.82[CEU][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs16953899	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16953900	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17235551	0.86[JPT][hapmap]
rs17301278	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17301327	0.81[CHB][hapmap]
rs17301334	0.81[CHB][hapmap]
rs2282424	0.87[EUR][1000 genomes]
rs3825522	0.86[JPT][hapmap]
rs4445760	0.92[EUR][1000 genomes]
rs4456365	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs5024203	0.86[ASN][1000 genomes]
rs57348783	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57806253	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59695980	0.96[EUR][1000 genomes]
rs61107763	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6491338	0.86[ASN][1000 genomes]
rs6491339	0.86[JPT][hapmap]
rs6491341	0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7317886	0.91[EUR][1000 genomes]
rs7317904	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322677	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7322973	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7331281	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7332127	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7332327	0.91[EUR][1000 genomes]
rs7337250	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7338056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7338420	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7338629	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7983632	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7983895	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7988998	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989356	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990235	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990802	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7991020	0.84[JPT][hapmap]
rs7995449	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7997476	0.83[ASN][1000 genomes]
rs7997574	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8000282	0.82[CEU][hapmap]
rs9513209	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9513210	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9513211	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9513214	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513215	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513219	0.86[ASN][1000 genomes]
rs9513221	0.82[CEU][hapmap]
rs9516832	0.87[EUR][1000 genomes]
rs9516834	0.91[EUR][1000 genomes]
rs9516835	0.92[EUR][1000 genomes]
rs9516841	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9516843	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9516844	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516845	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516846	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516847	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516848	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9516849	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516850	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516864	0.86[ASN][1000 genomes]
rs9516867	0.86[ASN][1000 genomes]
rs9516870	0.82[CEU][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes]
rs9516871	0.82[CEU][hapmap]
rs9516872	0.82[CEU][hapmap]
rs9584530	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97830200-97843400	Weak transcription	Spleen	Spleen
2	chr13:97838600-97844000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97838800-97843600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr13:97839600-97844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:97840200-97841400	Enhancers	NHEK	skin
6	chr13:97840400-97841400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr13:97840400-97841600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr13:97840800-97842000	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr13:97840800-97843400	Weak transcription	Thymus	Thymus
10	chr13:97840800-97843600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:97840800-97843600	Weak transcription	HSMMtube	muscle
12	chr13:97841000-97845200	Weak transcription	HMEC	breast
13	chr13:97841000-97846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:97841200-97841400	Enhancers	K562	blood
15	chr13:97841200-97842200	Weak transcription	Fetal Thymus	thymus
16	chr13:97841200-97842200	Weak transcription	Ovary	ovary
17	chr13:97841200-97843400	Weak transcription	Primary hematopoietic stem cells	blood
18	chr13:97841200-97843400	Weak transcription	Placenta	Placenta
19	chr13:97841200-97843800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr13:97841200-97845200	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links