Variant report

Variant	rs2282424
Chromosome Location	chr13:97788446-97788447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs16953899	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16953900	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17301278	0.87[EUR][1000 genomes]
rs4445760	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4456365	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57348783	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs57806253	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs59695980	0.91[EUR][1000 genomes]
rs61107763	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7317886	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7317904	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7322677	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7322973	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7331281	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7332127	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7332327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7337250	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338056	0.82[CEU][hapmap];0.81[LWK][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7338420	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338629	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7983895	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7988998	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7989356	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7990235	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7990802	0.84[AMR][1000 genomes]
rs7995449	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7997574	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8000282	0.91[MEX][hapmap]
rs9513209	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9513210	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9513211	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9513214	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9513215	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9513216	0.87[EUR][1000 genomes]
rs9513221	0.91[MEX][hapmap]
rs9516832	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9516834	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9516835	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9516841	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9516843	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516844	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9516845	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516846	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516847	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516848	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516849	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516850	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516853	0.87[EUR][1000 genomes]
rs9516870	0.91[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97783400-97792600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr13:97784000-97788600	Weak transcription	Brain Substantia Nigra	brain
3	chr13:97784400-97793400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:97784400-97793400	Weak transcription	K562	blood
5	chr13:97786600-97793400	Weak transcription	Colonic Mucosa	Colon
6	chr13:97786600-97793400	Weak transcription	Esophagus	oesophagus
7	chr13:97786800-97788600	Enhancers	A549	lung
8	chr13:97786800-97788800	Weak transcription	Pancreas	Pancrea
9	chr13:97786800-97792000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr13:97786800-97792000	Weak transcription	NHDF-Ad	bronchial
11	chr13:97787000-97788600	Enhancers	HepG2	liver
12	chr13:97787000-97792000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:97787000-97792000	Weak transcription	HSMMtube	muscle
14	chr13:97787000-97793000	Weak transcription	NH-A	brain
15	chr13:97787000-97793200	Weak transcription	Hela-S3	cervix
16	chr13:97787000-97799000	Weak transcription	Lung	lung
17	chr13:97787400-97789400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr13:97787400-97792000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:97787600-97790000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr13:97788000-97788800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr13:97788000-97789800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:97788200-97789200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr13:97788200-97789200	Enhancers	Brain Anterior Caudate	brain
24	chr13:97788200-97789400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:97788400-97789000	Enhancers	Placenta	Placenta
26	chr13:97788400-97789200	Enhancers	Brain Cingulate Gyrus	brain

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