Variant report

Variant	rs9516832
Chromosome Location	chr13:97775179-97775180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97773536..97776027-chr13:97843320..97845998,2	MCF-7	breast:
2	chr13:97773812..97776578-chr13:97779026..97783361,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs16953899	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16953900	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17301278	0.87[EUR][1000 genomes]
rs2282424	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4445760	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4456365	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57348783	0.85[EUR][1000 genomes]
rs57806253	0.85[EUR][1000 genomes]
rs59695980	0.90[EUR][1000 genomes]
rs61107763	0.81[EUR][1000 genomes]
rs7317886	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7317904	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7322677	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7322973	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7331281	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332127	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7332327	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7337250	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338056	0.85[EUR][1000 genomes]
rs7338420	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7338629	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7983895	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7988998	0.85[EUR][1000 genomes]
rs7989356	0.81[EUR][1000 genomes]
rs7990235	0.85[EUR][1000 genomes]
rs7995449	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7997574	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9513209	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9513210	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9513211	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9513214	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9513215	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9513216	0.87[EUR][1000 genomes]
rs9516834	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9516835	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516841	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9516843	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9516844	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9516845	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516846	0.85[EUR][1000 genomes]
rs9516847	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516848	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9516849	0.85[EUR][1000 genomes]
rs9516850	0.85[EUR][1000 genomes]
rs9516853	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832693	chr13:97594845-97777481	Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1053686	chr13:97771607-97802296	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97766800-97778200	Weak transcription	Esophagus	oesophagus
2	chr13:97767800-97776600	Weak transcription	Gastric	stomach
3	chr13:97767800-97777200	Weak transcription	Fetal Kidney	kidney
4	chr13:97768000-97777000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:97768800-97775600	Weak transcription	Lung	lung
6	chr13:97768800-97776200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:97769000-97778400	Weak transcription	Right Atrium	heart
8	chr13:97770200-97776600	Weak transcription	Fetal Stomach	stomach
9	chr13:97770200-97777200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:97770400-97777000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr13:97770800-97776200	Weak transcription	Left Ventricle	heart
12	chr13:97770800-97777400	Weak transcription	Psoas Muscle	Psoas
13	chr13:97771400-97775800	Enhancers	NHEK	skin
14	chr13:97771400-97777800	Enhancers	HMEC	breast
15	chr13:97771400-97779600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr13:97771600-97775600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:97771800-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr13:97772000-97775800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr13:97772400-97775400	Enhancers	Placenta Amnion	Placenta Amnion
20	chr13:97772400-97775800	Enhancers	Osteobl	bone
21	chr13:97772400-97778800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr13:97772600-97777400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:97772800-97775800	Enhancers	NHLF	lung
24	chr13:97772800-97777400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr13:97772800-97779000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr13:97773000-97776600	Weak transcription	Brain Substantia Nigra	brain
27	chr13:97773000-97777600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr13:97773200-97778200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:97773400-97777000	Enhancers	Fetal Lung	lung
30	chr13:97773400-97779000	Enhancers	HSMMtube	muscle
31	chr13:97773400-97779600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:97773600-97775600	Enhancers	HUVEC	blood vessel
33	chr13:97773600-97777400	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr13:97773600-97779200	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr13:97773800-97775600	Enhancers	NHDF-Ad	bronchial
36	chr13:97774000-97775400	Enhancers	Fetal Heart	heart
37	chr13:97774000-97777600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr13:97774000-97784400	Enhancers	Placenta	Placenta
39	chr13:97774200-97775400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr13:97774200-97775400	Flanking Active TSS	A549	lung
41	chr13:97774200-97775800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:97774200-97776400	Weak transcription	Right Ventricle	heart
43	chr13:97774200-97776800	Weak transcription	Fetal Intestine Large	intestine
44	chr13:97774200-97777000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr13:97774200-97777200	Enhancers	Hela-S3	cervix
46	chr13:97774400-97775200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
47	chr13:97774400-97775200	Flanking Active TSS	NH-A	brain
48	chr13:97774600-97775400	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr13:97774600-97775400	Flanking Active TSS	HSMM	muscle
50	chr13:97774800-97775200	Enhancers	Brain Inferior Temporal Lobe	brain

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