Variant report

Variant	rs9516881
Chromosome Location	chr13:97912532-97912533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr13:97776736..97778523-chr13:97910943..97912665,2	K562	blood:
2	chr13:97904118..97908983-chr13:97910164..97913443,8	K562	blood:
3	chr13:97910690..97912822-chr13:97926966..97929866,2	K562	blood:
4	chr13:97844488..97847084-chr13:97911183..97912981,2	K562	blood:
5	chr13:97905079..97913701-chr13:97925818..97929496,9	MCF-7	breast:
6	chr13:97912350..97913976-chr13:97940580..97942468,2	MCF-7	breast:
7	chr13:97874246..97876835-chr13:97910317..97913279,2	MCF-7	breast:
8	chr13:97898743..97903163-chr13:97911001..97914610,5	K562	blood:
9	chr13:97906827..97909135-chr13:97910208..97912536,3	MCF-7	breast:
10	chr13:97791209..97794724-chr13:97910045..97913597,5	K562	blood:
11	chr13:97871969..97881145-chr13:97906530..97915784,18	K562	blood:

No data

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6491346	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs9516882	1.00[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97903200-97912600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr13:97903200-97913600	Weak transcription	Fetal Brain Male	brain
3	chr13:97903400-97920600	Weak transcription	Thymus	Thymus
4	chr13:97905600-97914800	Enhancers	Small Intestine	intestine
5	chr13:97906200-97916200	Enhancers	Brain Angular Gyrus	brain
6	chr13:97906600-97913200	Enhancers	Stomach Mucosa	stomach
7	chr13:97906800-97912600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr13:97906800-97912800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:97906800-97913000	Enhancers	NHDF-Ad	bronchial
10	chr13:97906800-97914200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:97906800-97915800	Enhancers	Brain Hippocampus Middle	brain
12	chr13:97906800-97916200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:97906800-97919800	Enhancers	Brain Anterior Caudate	brain
14	chr13:97907000-97914600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr13:97907000-97914800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:97907000-97915000	Enhancers	Colon Smooth Muscle	Colon
17	chr13:97907000-97915600	Enhancers	Rectal Smooth Muscle	rectum
18	chr13:97907000-97915800	Enhancers	Brain Cingulate Gyrus	brain
19	chr13:97907200-97914800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr13:97907200-97914800	Enhancers	Psoas Muscle	Psoas
21	chr13:97907200-97916000	Enhancers	Right Ventricle	heart
22	chr13:97908600-97912600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr13:97908600-97914400	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr13:97909200-97914200	Enhancers	HMEC	breast
25	chr13:97909200-97918600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr13:97909400-97912800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr13:97909400-97914600	Enhancers	Placenta	Placenta
28	chr13:97909600-97913600	Enhancers	Fetal Intestine Large	intestine
29	chr13:97909600-97914400	Enhancers	Placenta Amnion	Placenta Amnion
30	chr13:97909600-97914600	Genic enhancers	Fetal Muscle Leg	muscle
31	chr13:97909600-97914600	Enhancers	Left Ventricle	heart
32	chr13:97909600-97914800	Enhancers	Pancreas	Pancrea
33	chr13:97909800-97912600	Enhancers	Esophagus	oesophagus
34	chr13:97909800-97912600	Strong transcription	Fetal Stomach	stomach
35	chr13:97909800-97912800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr13:97909800-97912800	Enhancers	Aorta	Aorta
37	chr13:97909800-97913000	Genic enhancers	Fetal Intestine Small	intestine
38	chr13:97909800-97914000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr13:97909800-97914600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr13:97909800-97914800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:97909800-97914800	Enhancers	Lung	lung
42	chr13:97909800-97915000	Enhancers	Right Atrium	heart
43	chr13:97909800-97915600	Enhancers	Ovary	ovary
44	chr13:97910000-97914200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr13:97910200-97912800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr13:97910200-97913800	Enhancers	Fetal Heart	heart
47	chr13:97910200-97914000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr13:97910400-97912600	Enhancers	Brain Substantia Nigra	brain
49	chr13:97910400-97913000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr13:97910400-97913400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links