Variant report

Variant	rs9516882
Chromosome Location	chr13:97915404-97915405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97907577..97910911-chr13:97913686..97917322,4	K562	blood:
2	chr13:97915258..97917739-chr13:97924831..97926960,2	MCF-7	breast:
3	chr13:97905355..97907747-chr13:97912820..97915767,3	MCF-7	breast:
4	chr13:97871969..97881145-chr13:97906530..97915784,18	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10508030	1.00[MEX][hapmap]
rs10508031	1.00[MEX][hapmap]
rs6491346	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[CHD][hapmap]
rs9516857	1.00[CHD][hapmap]
rs9516869	1.00[CHD][hapmap]
rs9516881	1.00[CEU][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97903400-97920600	Weak transcription	Thymus	Thymus
2	chr13:97906200-97916200	Enhancers	Brain Angular Gyrus	brain
3	chr13:97906800-97915800	Enhancers	Brain Hippocampus Middle	brain
4	chr13:97906800-97916200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:97906800-97919800	Enhancers	Brain Anterior Caudate	brain
6	chr13:97907000-97915600	Enhancers	Rectal Smooth Muscle	rectum
7	chr13:97907000-97915800	Enhancers	Brain Cingulate Gyrus	brain
8	chr13:97907200-97916000	Enhancers	Right Ventricle	heart
9	chr13:97909200-97918600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:97909800-97915600	Enhancers	Ovary	ovary
11	chr13:97910400-97917000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:97910400-97918600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:97910600-97927600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
15	chr13:97910800-97918800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr13:97911000-97918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr13:97911000-97919200	Weak transcription	Fetal Kidney	kidney
18	chr13:97911200-97915800	Genic enhancers	HepG2	liver
19	chr13:97911200-97918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:97911200-97919200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr13:97911400-97919200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr13:97911400-97919600	Weak transcription	Primary B cells from cord blood	blood
23	chr13:97911800-97915600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
24	chr13:97911800-97915600	Enhancers	Gastric	stomach
25	chr13:97912000-97918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:97912200-97919200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr13:97912400-97918600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr13:97912400-97920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr13:97912800-97917000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr13:97912800-97918600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr13:97912800-97918800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr13:97912800-97925200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:97913000-97917400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:97913000-97918400	Weak transcription	Fetal Muscle Trunk	muscle
35	chr13:97913000-97918600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:97913000-97919800	Weak transcription	NHEK	skin
37	chr13:97913200-97924800	Weak transcription	Stomach Mucosa	stomach
38	chr13:97913400-97920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr13:97913600-97915600	Enhancers	Liver	Liver
40	chr13:97913600-97916200	Strong transcription	Fetal Intestine Small	intestine
41	chr13:97913600-97919600	Weak transcription	Fetal Intestine Large	intestine
42	chr13:97913600-97925200	Weak transcription	HSMMtube	muscle
43	chr13:97913600-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr13:97913800-97917000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr13:97913800-97918600	Weak transcription	NH-A	brain
46	chr13:97913800-97919400	Weak transcription	Fetal Heart	heart
47	chr13:97913800-97920200	Weak transcription	Primary T cells from cord blood	blood
48	chr13:97913800-97926600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr13:97914000-97917200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:97914000-97918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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