Variant report

Variant	rs9516857
Chromosome Location	chr13:97849280-97849281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs6491346	1.00[CHD][hapmap]
rs7325530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	1.00[ASN][1000 genomes]
rs9516855	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516856	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516860	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516863	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516870	0.81[MKK][hapmap]
rs9516882	1.00[CHD][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
4	chr13:97847200-97849400	Enhancers	K562	blood
5	chr13:97847400-97858200	Weak transcription	HSMM	muscle
6	chr13:97847600-97850800	Weak transcription	Placenta	Placenta
7	chr13:97847600-97851200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr13:97847600-97851200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr13:97847800-97849400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr13:97848200-97849400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr13:97848800-97850000	Enhancers	HUVEC	blood vessel
12	chr13:97849000-97849400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:97849000-97849400	Enhancers	HepG2	liver
14	chr13:97849200-97849400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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