Variant report

Variant	rs9516865
Chromosome Location	chr13:97861011-97861012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs6491346	1.00[CHD][hapmap]
rs7325530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.94[TSI][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	1.00[ASN][1000 genomes]
rs9516855	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516856	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516857	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516860	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516863	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516870	0.81[MKK][hapmap]
rs9516882	1.00[CHD][hapmap]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97853400-97861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:97858400-97862600	Weak transcription	Brain Anterior Caudate	brain
3	chr13:97858600-97861600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:97858600-97862400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:97858600-97863000	Weak transcription	HSMM	muscle
6	chr13:97858600-97864000	Weak transcription	HepG2	liver
7	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
8	chr13:97858800-97861800	Weak transcription	Brain Substantia Nigra	brain
9	chr13:97859000-97863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr13:97859000-97863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:97859200-97863600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr13:97859400-97863000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr13:97859400-97864400	Weak transcription	Stomach Mucosa	stomach
14	chr13:97859800-97863600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr13:97860400-97864200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:97860400-97864200	Weak transcription	Fetal Intestine Small	intestine
17	chr13:97861000-97861400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr13:97861000-97862000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr13:97861000-97863800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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