Variant report

Variant	rs9516868
Chromosome Location	chr13:97861924-97861925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97861431..97863412-chr13:97874810..97876827,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs7325530	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	1.00[ASN][1000 genomes]
rs9513218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516855	1.00[ASN][1000 genomes]
rs9516856	1.00[ASN][1000 genomes]
rs9516857	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9516860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858400-97862600	Weak transcription	Brain Anterior Caudate	brain
2	chr13:97858600-97862400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:97858600-97863000	Weak transcription	HSMM	muscle
4	chr13:97858600-97864000	Weak transcription	HepG2	liver
5	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
6	chr13:97859000-97863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:97859000-97863400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr13:97859200-97863600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:97859400-97863000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:97859400-97864400	Weak transcription	Stomach Mucosa	stomach
11	chr13:97859800-97863600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr13:97860400-97864200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr13:97860400-97864200	Weak transcription	Fetal Intestine Small	intestine
14	chr13:97861000-97862000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr13:97861000-97863800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:97861400-97862400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr13:97861400-97865000	Enhancers	Dnd41	blood
18	chr13:97861600-97863800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr13:97861600-97863800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr13:97861600-97863800	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr13:97861600-97863800	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr13:97861600-97863800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr13:97861600-97863800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
24	chr13:97861600-97865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr13:97861600-97865400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:97861800-97862000	Enhancers	Brain Substantia Nigra	brain
27	chr13:97861800-97862200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
28	chr13:97861800-97862200	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr13:97861800-97862400	Enhancers	Primary T cells from cord blood	blood
30	chr13:97861800-97863600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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