Variant report

Variant	rs9516854
Chromosome Location	chr13:97846551-97846552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97844488..97847084-chr13:97911183..97912981,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6491346	1.00[CEU][hapmap]
rs7325530	1.00[ASN][1000 genomes]
rs7329695	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7999029	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516855	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516856	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516857	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9516860	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	1.00[ASN][1000 genomes]
rs9516863	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	1.00[ASN][1000 genomes]
rs9516866	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	1.00[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516881	1.00[CEU][hapmap]
rs9516882	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97842400-97846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:97842800-97847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr13:97843200-97847200	Enhancers	Stomach Mucosa	stomach
5	chr13:97843400-97847600	Enhancers	Placenta	Placenta
6	chr13:97843600-97847200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:97843800-97846600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr13:97844000-97847600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:97844400-97846600	Weak transcription	Brain Substantia Nigra	brain
11	chr13:97844400-97846600	Weak transcription	Fetal Muscle Leg	muscle
12	chr13:97844400-97846800	Weak transcription	Brain Hippocampus Middle	brain
13	chr13:97844800-97846600	Weak transcription	Brain Anterior Caudate	brain
14	chr13:97844800-97846800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr13:97845200-97847800	Enhancers	HMEC	breast
16	chr13:97845200-97847800	Enhancers	HUVEC	blood vessel
17	chr13:97845400-97847200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr13:97845800-97847400	Enhancers	HSMMtube	muscle
19	chr13:97845800-97847600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr13:97845800-97847600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr13:97845800-97847800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:97846000-97847400	Enhancers	HSMM	muscle
23	chr13:97846000-97847600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:97846000-97847600	Enhancers	NHEK	skin
25	chr13:97846200-97847200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr13:97846400-97847200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr13:97846400-97847200	Flanking Active TSS	K562	blood
29	chr13:97846400-97847200	Enhancers	NH-A	brain
30	chr13:97846400-97847600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:97846400-97847600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine

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