Variant report

Variant	rs7999029
Chromosome Location	chr13:97844913-97844914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97773536..97776027-chr13:97843320..97845998,2	MCF-7	breast:
2	chr13:97781642..97783757-chr13:97842419..97845411,2	MCF-7	breast:
3	chr13:97843816..97845941-chr13:97847770..97849726,2	K562	blood:
4	chr13:97844488..97847084-chr13:97911183..97912981,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6491346	1.00[CEU][hapmap]
rs7325530	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[CHB][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	1.00[ASN][1000 genomes]
rs9516854	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516855	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516857	1.00[CHB][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516860	0.87[ASN][1000 genomes]
rs9516862	1.00[ASN][1000 genomes]
rs9516863	1.00[ASN][1000 genomes]
rs9516865	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	1.00[ASN][1000 genomes]
rs9516868	1.00[ASN][1000 genomes]
rs9516869	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9516881	1.00[CEU][hapmap]
rs9516882	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97841000-97845200	Weak transcription	HMEC	breast
2	chr13:97841000-97846400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:97841200-97845200	Weak transcription	Gastric	stomach
4	chr13:97841400-97845800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr13:97841400-97846000	Weak transcription	NHEK	skin
6	chr13:97842000-97846400	Enhancers	K562	blood
7	chr13:97842400-97846800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr13:97842800-97847600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr13:97843200-97845000	Enhancers	Duodenum Mucosa	Duodenum
11	chr13:97843200-97847200	Enhancers	Stomach Mucosa	stomach
12	chr13:97843400-97847600	Enhancers	Placenta	Placenta
13	chr13:97843600-97845200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:97843600-97847200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr13:97843800-97845000	Enhancers	Fetal Intestine Large	intestine
16	chr13:97843800-97846600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr13:97844000-97847600	Enhancers	Placenta Amnion	Placenta Amnion
18	chr13:97844200-97845400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr13:97844200-97846000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:97844200-97846000	Weak transcription	HSMM	muscle
21	chr13:97844200-97846200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr13:97844400-97845800	Weak transcription	HSMMtube	muscle
24	chr13:97844400-97846600	Weak transcription	Brain Substantia Nigra	brain
25	chr13:97844400-97846600	Weak transcription	Fetal Muscle Leg	muscle
26	chr13:97844400-97846800	Weak transcription	Brain Hippocampus Middle	brain
27	chr13:97844800-97845000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr13:97844800-97845000	Enhancers	HepG2	liver
29	chr13:97844800-97845400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr13:97844800-97846600	Weak transcription	Brain Anterior Caudate	brain
31	chr13:97844800-97846800	Weak transcription	Brain Cingulate Gyrus	brain

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