Variant report

Variant	rs7329695
Chromosome Location	chr13:97865063-97865064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97863456..97868216-chr13:97870122..97874469,4	MCF-7	breast:
2	chr13:97863320..97866050-chr13:97870131..97873643,3	K562	blood:
3	chr13:97762021..97762782-chr13:97864746..97865670,2	K562	blood:
4	chr13:97857393..97860192-chr13:97862596..97865751,4	K562	blood:
5	chr13:97761531..97763400-chr13:97864695..97865888,12	MCF-7	breast:
6	chr13:97864765..97865689-chr13:97996737..97997349,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs6491346	1.00[CHD][hapmap]
rs7325530	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	1.00[ASN][1000 genomes]
rs9516855	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516856	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516857	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516860	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516863	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516870	0.86[MKK][hapmap];0.84[TSI][hapmap]
rs9516882	1.00[CHD][hapmap]

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
2	chr13:97861600-97865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr13:97861600-97865400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr13:97862000-97865400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr13:97862000-97865600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr13:97862400-97865400	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:97862800-97865200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:97862800-97865200	Enhancers	HMEC	breast
9	chr13:97863000-97865400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:97863000-97865400	Enhancers	Brain Hippocampus Middle	brain
11	chr13:97863200-97865200	Enhancers	Brain Substantia Nigra	brain
12	chr13:97863400-97865200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:97863600-97865400	Enhancers	Brain Anterior Caudate	brain
14	chr13:97863600-97866600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr13:97863600-97866800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr13:97863600-97866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr13:97863600-97867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr13:97863800-97866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr13:97863800-97866600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr13:97863800-97866800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
23	chr13:97863800-97866800	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr13:97863800-97866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr13:97863800-97866800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr13:97863800-97867000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr13:97864000-97865200	Enhancers	Primary T cells from cord blood	blood
28	chr13:97864000-97865200	Enhancers	HepG2	liver
29	chr13:97864000-97866800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr13:97864200-97865400	Enhancers	K562	blood
31	chr13:97864400-97865200	Enhancers	Stomach Mucosa	stomach
32	chr13:97864400-97865200	Enhancers	A549	lung
33	chr13:97864600-97872800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:97864600-97873800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr13:97864800-97865200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr13:97864800-97874200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr13:97865000-97865400	Enhancers	GM12878-XiMat	blood
38	chr13:97865000-97866800	Weak transcription	Fetal Thymus	thymus
39	chr13:97865000-97867000	Weak transcription	Dnd41	blood
40	chr13:97865000-97867200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:97865000-97867200	Weak transcription	Placenta	Placenta

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