Variant report

Variant	rs9516856
Chromosome Location	chr13:97848037-97848038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs6491341	0.83[YRI][hapmap]
rs6491346	1.00[CEU][hapmap]
rs7325530	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9513218	1.00[ASN][1000 genomes]
rs9516854	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516857	1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516860	0.87[ASN][1000 genomes]
rs9516862	1.00[ASN][1000 genomes]
rs9516863	1.00[ASN][1000 genomes]
rs9516865	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	1.00[ASN][1000 genomes]
rs9516868	1.00[ASN][1000 genomes]
rs9516869	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9516881	1.00[CEU][hapmap]
rs9516882	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1137	chr13:97803474-97848814	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97843000-97850600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:97844200-97849000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:97846200-97852400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
5	chr13:97847200-97848400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr13:97847200-97848800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr13:97847200-97849000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:97847200-97849400	Enhancers	K562	blood
9	chr13:97847400-97848600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr13:97847400-97848800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr13:97847400-97858200	Weak transcription	HSMM	muscle
12	chr13:97847600-97850800	Weak transcription	Placenta	Placenta
13	chr13:97847600-97851200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:97847600-97851200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr13:97847800-97848200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:97847800-97848800	Weak transcription	HUVEC	blood vessel
17	chr13:97847800-97849400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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