Variant report

Variant	rs9516862
Chromosome Location	chr13:97854895-97854896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs7325530	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	1.00[ASN][1000 genomes]
rs9513218	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	1.00[ASN][1000 genomes]
rs9516855	1.00[ASN][1000 genomes]
rs9516856	1.00[ASN][1000 genomes]
rs9516857	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9516860	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516869	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97846400-97858200	Weak transcription	Fetal Intestine Small	intestine
2	chr13:97847400-97858200	Weak transcription	HSMM	muscle
3	chr13:97849400-97855800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr13:97850600-97857000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr13:97852600-97856400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr13:97852600-97858200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr13:97853400-97857800	Weak transcription	HUVEC	blood vessel
8	chr13:97853400-97861600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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