Variant report

Variant	rs9516869
Chromosome Location	chr13:97863805-97863806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97854002..97856738-chr13:97861937..97864519,2	K562	blood:
2	chr13:97863456..97868216-chr13:97870122..97874469,4	MCF-7	breast:
3	chr13:97857397..97860192-chr13:97862596..97864158,2	K562	blood:
4	chr13:97863320..97866050-chr13:97870131..97873643,3	K562	blood:
5	chr13:97857393..97860192-chr13:97862596..97865751,4	K562	blood:
6	chr13:97862725..97864996-chr13:97866884..97868845,2	K562	blood:

Variant related genes	Relation type
ENSG00000139793	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs6491346	1.00[CHD][hapmap]
rs7325530	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329695	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7999029	1.00[ASN][1000 genomes]
rs9513218	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516854	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9516855	1.00[ASN][1000 genomes]
rs9516856	1.00[ASN][1000 genomes]
rs9516857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516858	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9516860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9516862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516865	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516882	1.00[CHD][hapmap]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97858600-97864000	Weak transcription	HepG2	liver
2	chr13:97858600-97867200	Weak transcription	Hela-S3	cervix
3	chr13:97859400-97864400	Weak transcription	Stomach Mucosa	stomach
4	chr13:97860400-97864200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr13:97860400-97864200	Weak transcription	Fetal Intestine Small	intestine
6	chr13:97861400-97865000	Enhancers	Dnd41	blood
7	chr13:97861600-97865200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr13:97861600-97865400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr13:97862000-97864000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr13:97862000-97865000	Enhancers	Fetal Thymus	thymus
11	chr13:97862000-97865400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr13:97862000-97865600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr13:97862200-97864000	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr13:97862400-97865400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr13:97862800-97865200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:97862800-97865200	Enhancers	HMEC	breast
17	chr13:97863000-97864000	Enhancers	HSMM	muscle
18	chr13:97863000-97864600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr13:97863000-97864800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr13:97863000-97865000	Enhancers	Brain Cingulate Gyrus	brain
21	chr13:97863000-97865000	Enhancers	Ovary	ovary
22	chr13:97863000-97865400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:97863000-97865400	Enhancers	Brain Hippocampus Middle	brain
24	chr13:97863200-97864400	Weak transcription	HSMMtube	muscle
25	chr13:97863200-97865000	Weak transcription	GM12878-XiMat	blood
26	chr13:97863200-97865200	Enhancers	Brain Substantia Nigra	brain
27	chr13:97863400-97864000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:97863400-97864000	Bivalent Enhancer	Primary T cells from cord blood	blood
29	chr13:97863400-97864000	Enhancers	A549	lung
30	chr13:97863400-97864600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr13:97863400-97865200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr13:97863600-97864600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr13:97863600-97864800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr13:97863600-97865000	Enhancers	Adipose Nuclei	Adipose
35	chr13:97863600-97865400	Enhancers	Brain Anterior Caudate	brain
36	chr13:97863600-97866600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr13:97863600-97866800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr13:97863600-97866800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr13:97863600-97867000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr13:97863800-97864200	Weak transcription	Placenta	Placenta
41	chr13:97863800-97864200	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
42	chr13:97863800-97864600	Weak transcription	NH-A	brain
43	chr13:97863800-97866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr13:97863800-97866600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr13:97863800-97866800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
47	chr13:97863800-97866800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr13:97863800-97866800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr13:97863800-97866800	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr13:97863800-97866800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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