Variant report

Variant	rs10508031
Chromosome Location	chr13:97953758-97953759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97944192..97946659-chr13:97951933..97954715,2	MCF-7	breast:
2	chr13:97946659..97950744-chr13:97950983..97954750,4	MCF-7	breast:
3	chr13:97940763..97942613-chr13:97953141..97954942,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508030	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616755	1.00[JPT][hapmap]
rs11843682	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs12864731	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1328834	0.82[EUR][1000 genomes]
rs16951504	0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954000	0.82[EUR][1000 genomes]
rs16954002	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954055	1.00[JPT][hapmap]
rs16954085	1.00[JPT][hapmap]
rs2173036	1.00[JPT][hapmap]
rs2389823	0.82[TSI][hapmap]
rs35538229	0.82[EUR][1000 genomes]
rs56940858	0.82[EUR][1000 genomes]
rs57402474	0.91[EUR][1000 genomes]
rs57526148	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58421118	0.82[EUR][1000 genomes]
rs59357402	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60961843	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61255793	0.82[EUR][1000 genomes]
rs6491346	1.00[MEX][hapmap]
rs7986922	1.00[JPT][hapmap]
rs7989284	1.00[JPT][hapmap]
rs9513228	0.82[EUR][1000 genomes]
rs9513229	0.82[EUR][1000 genomes]
rs9513230	0.82[EUR][1000 genomes]
rs9516882	1.00[MEX][hapmap]
rs9516895	0.89[ASW][hapmap]
rs9516896	0.84[EUR][1000 genomes]
rs9516897	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9516898	0.82[EUR][1000 genomes]
rs9516899	0.82[EUR][1000 genomes]
rs953504	0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs9582126	1.00[JPT][hapmap]
rs9584541	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584551	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
5	chr13:97934000-97954400	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
7	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
8	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
10	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
11	chr13:97947400-97954400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr13:97948000-97954400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
14	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
16	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
17	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr13:97948800-97954200	Weak transcription	Fetal Heart	heart
19	chr13:97949400-97953800	Weak transcription	Hela-S3	cervix
20	chr13:97949800-97953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:97949800-97954000	Weak transcription	Primary T cells from cord blood	blood
22	chr13:97949800-97955800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
25	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
26	chr13:97950200-97961000	Weak transcription	K562	blood
27	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
29	chr13:97951200-97958400	Weak transcription	Duodenum Mucosa	Duodenum
30	chr13:97951200-97958400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr13:97951200-97958600	Weak transcription	HSMM	muscle
32	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
33	chr13:97951400-97953800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:97951400-97954200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr13:97951400-97954800	Enhancers	Colon Smooth Muscle	Colon
36	chr13:97951400-97955400	Weak transcription	Small Intestine	intestine
37	chr13:97951400-97956400	Enhancers	Brain Substantia Nigra	brain
38	chr13:97951400-97958400	Weak transcription	Fetal Kidney	kidney
39	chr13:97951400-97958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr13:97951400-97960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr13:97951600-97953800	Weak transcription	HMEC	breast
42	chr13:97951600-97953800	Weak transcription	NHEK	skin
43	chr13:97951600-97954800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr13:97951600-97958400	Weak transcription	NH-A	brain
45	chr13:97951600-97958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr13:97951600-97958600	Weak transcription	Osteobl	bone
47	chr13:97951800-97958000	Weak transcription	NHLF	lung
48	chr13:97952000-97955800	Enhancers	Right Ventricle	heart
49	chr13:97952200-97955800	Enhancers	Pancreas	Pancrea
50	chr13:97952200-97955800	Enhancers	Psoas Muscle	Psoas

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