Variant report

Variant	rs60961843
Chromosome Location	chr13:97951716-97951717
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97946659..97950744-chr13:97950983..97954750,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10508030	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508031	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16951504	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954002	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57402474	0.86[EUR][1000 genomes]
rs57526148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59357402	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584541	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:97933000-97953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
10	chr13:97933400-97952400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr13:97933600-97953600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr13:97934000-97954400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
14	chr13:97936800-97952200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
16	chr13:97943400-97953600	Weak transcription	Esophagus	oesophagus
17	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
19	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
20	chr13:97947000-97953200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:97947400-97954400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:97947800-97953400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr13:97947800-97953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr13:97948000-97953400	Weak transcription	Spleen	Spleen
25	chr13:97948000-97954400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
27	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
29	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
30	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr13:97948800-97954200	Weak transcription	Fetal Heart	heart
32	chr13:97949200-97953200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr13:97949200-97953600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr13:97949400-97953800	Weak transcription	Hela-S3	cervix
35	chr13:97949800-97953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr13:97949800-97954000	Weak transcription	Primary T cells from cord blood	blood
37	chr13:97949800-97955800	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr13:97950000-97952200	Weak transcription	Pancreas	Pancrea
39	chr13:97950000-97953200	Weak transcription	Right Atrium	heart
40	chr13:97950000-97953400	Weak transcription	Adipose Nuclei	Adipose
41	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
43	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
44	chr13:97950200-97952400	Weak transcription	Primary B cells from peripheral blood	blood
45	chr13:97950200-97953200	Strong transcription	Fetal Lung	lung
46	chr13:97950200-97953400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr13:97950200-97953600	Weak transcription	Fetal Muscle Leg	muscle
48	chr13:97950200-97961000	Weak transcription	K562	blood
49	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr13:97950400-97953400	Enhancers	Skeletal Muscle Female	skeletal muscle

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