Variant report

Variant	rs9584541
Chromosome Location	chr13:97956341-97956342
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97954626..97957097-chr13:97959109..97962404,3	K562	blood:
2	chr13:97942331..97944777-chr13:97956193..97959164,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10508030	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10508031	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616755	1.00[JPT][hapmap]
rs11843682	1.00[CEU][hapmap]
rs12864731	0.81[TSI][hapmap]
rs16951504	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954002	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954055	1.00[JPT][hapmap]
rs16954085	1.00[JPT][hapmap]
rs2173036	1.00[JPT][hapmap]
rs2389823	0.83[ASW][hapmap];0.91[TSI][hapmap]
rs57402474	0.88[EUR][1000 genomes]
rs57526148	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59357402	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60961843	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986922	1.00[JPT][hapmap]
rs7989284	1.00[JPT][hapmap]
rs9516896	0.82[EUR][1000 genomes]
rs9516897	0.81[TSI][hapmap]
rs953504	0.81[TSI][hapmap]
rs9582126	1.00[JPT][hapmap]
rs9584551	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
4	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
5	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
7	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
8	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
9	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
11	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
12	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
15	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
16	chr13:97950200-97961000	Weak transcription	K562	blood
17	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr13:97951200-97958400	Weak transcription	Duodenum Mucosa	Duodenum
20	chr13:97951200-97958400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr13:97951200-97958600	Weak transcription	HSMM	muscle
22	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
23	chr13:97951400-97956400	Enhancers	Brain Substantia Nigra	brain
24	chr13:97951400-97958400	Weak transcription	Fetal Kidney	kidney
25	chr13:97951400-97958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:97951400-97960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr13:97951600-97958400	Weak transcription	NH-A	brain
28	chr13:97951600-97958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr13:97951600-97958600	Weak transcription	Osteobl	bone
30	chr13:97951800-97958000	Weak transcription	NHLF	lung
31	chr13:97952600-97958200	Weak transcription	Aorta	Aorta
32	chr13:97952800-97956400	Enhancers	HepG2	liver
33	chr13:97953200-97956400	Enhancers	Left Ventricle	heart
34	chr13:97953200-97959000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr13:97954000-97956400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr13:97954000-97957800	Weak transcription	Gastric	stomach
37	chr13:97954000-97958400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr13:97954200-97958200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr13:97954200-97958200	Weak transcription	Rectal Smooth Muscle	rectum
40	chr13:97954200-97958600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr13:97954200-97958600	Weak transcription	Hela-S3	cervix
42	chr13:97954400-97958200	Weak transcription	Fetal Muscle Leg	muscle
43	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr13:97954800-97958800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr13:97954800-97959800	Weak transcription	Primary B cells from cord blood	blood
46	chr13:97955000-97960600	Weak transcription	Primary T cells from cord blood	blood
47	chr13:97955000-97964000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr13:97955200-97957600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:97955200-97957800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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