Variant report

Variant	rs11616755
Chromosome Location	chr13:98040277-98040278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98031666..98034483-chr13:98038323..98040718,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508030	1.00[JPT][hapmap]
rs10508031	1.00[JPT][hapmap]
rs16954002	1.00[JPT][hapmap]
rs16954055	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954076	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16954085	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17468123	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173036	1.00[JPT][hapmap]
rs74105176	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7986922	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs7989284	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9582126	1.00[JPT][hapmap]
rs9584541	1.00[JPT][hapmap]
rs9584551	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
2	chr13:98020000-98045600	Weak transcription	Hela-S3	cervix
3	chr13:98020200-98046000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:98020400-98048000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:98022000-98043400	Weak transcription	Stomach Mucosa	stomach
6	chr13:98022000-98045600	Weak transcription	Colonic Mucosa	Colon
7	chr13:98022000-98048000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr13:98022200-98042600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr13:98022600-98043800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr13:98023400-98041600	Strong transcription	Liver	Liver
11	chr13:98023600-98045400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:98024000-98044600	Weak transcription	GM12878-XiMat	blood
13	chr13:98026400-98045200	Weak transcription	Fetal Brain Male	brain
14	chr13:98026800-98041200	Strong transcription	HepG2	liver
15	chr13:98027200-98040400	Strong transcription	Fetal Lung	lung
16	chr13:98027800-98043800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:98027800-98044000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr13:98027800-98048000	Weak transcription	K562	blood
19	chr13:98028000-98056400	Weak transcription	Psoas Muscle	Psoas
20	chr13:98028200-98046200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr13:98028200-98048000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr13:98028200-98048000	Weak transcription	Fetal Kidney	kidney
23	chr13:98028400-98041000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr13:98028400-98047600	Weak transcription	HMEC	breast
25	chr13:98028600-98046800	Weak transcription	A549	lung
26	chr13:98029400-98046800	Weak transcription	NHLF	lung
27	chr13:98029600-98043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:98031800-98042800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr13:98032800-98042000	Strong transcription	Fetal Muscle Leg	muscle
30	chr13:98033400-98042800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr13:98033800-98041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr13:98035200-98040800	Weak transcription	Brain Substantia Nigra	brain
33	chr13:98035600-98041200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr13:98035600-98043600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr13:98036600-98040400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr13:98036800-98041800	Strong transcription	Fetal Intestine Small	intestine
37	chr13:98037200-98041000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:98037200-98041800	Strong transcription	Fetal Muscle Trunk	muscle
39	chr13:98037600-98040800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr13:98037600-98041400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:98037600-98043600	Weak transcription	HSMMtube	muscle
42	chr13:98037600-98048000	Weak transcription	Aorta	Aorta
43	chr13:98037800-98041600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr13:98038200-98041400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:98038200-98043200	Weak transcription	NHDF-Ad	bronchial
46	chr13:98038400-98041000	Enhancers	Fetal Thymus	thymus
47	chr13:98038400-98041400	Enhancers	Primary hematopoietic stem cells	blood
48	chr13:98038400-98041400	Strong transcription	Fetal Stomach	stomach
49	chr13:98038400-98042000	Strong transcription	HUVEC	blood vessel
50	chr13:98038600-98040400	Enhancers	Primary B cells from peripheral blood	blood

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