Variant report

Variant	rs9521665
Chromosome Location	chr13:110892527-110892528
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs613430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs614282	0.89[ASN][1000 genomes]
rs614786	0.89[ASN][1000 genomes]
rs678661	0.89[ASN][1000 genomes]
rs679062	0.89[ASN][1000 genomes]
rs679097	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs693831	0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7139637	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7337819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7338566	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7338606	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9515173	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9521658	0.85[AFR][1000 genomes]
rs9521660	0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs9521666	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9559749	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr13:110882600-110898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr13:110882600-110899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr13:110883200-110895000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:110884200-110902200	Weak transcription	HMEC	breast
12	chr13:110884600-110902400	Weak transcription	NHEK	skin
13	chr13:110884800-110914000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:110885200-110899000	Weak transcription	Fetal Intestine Large	intestine
15	chr13:110886600-110896000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:110888400-110896800	Strong transcription	Osteobl	bone
17	chr13:110888800-110893000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr13:110888800-110893800	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr13:110888800-110894600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr13:110889400-110893800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:110889400-110893800	Enhancers	Right Ventricle	heart
22	chr13:110889600-110892600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:110889600-110892600	Weak transcription	Ovary	ovary
24	chr13:110889600-110892800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr13:110889600-110900400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:110889600-110900600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr13:110889600-110904200	Enhancers	NHDF-Ad	bronchial
28	chr13:110889800-110892600	Weak transcription	Lung	lung
29	chr13:110889800-110892600	Weak transcription	Spleen	Spleen
30	chr13:110889800-110892800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr13:110889800-110896800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:110890000-110897000	Strong transcription	NH-A	brain
33	chr13:110890200-110892600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr13:110890200-110893600	Weak transcription	HSMMtube	muscle
35	chr13:110890200-110899400	Enhancers	Left Ventricle	heart
36	chr13:110890600-110893000	Enhancers	Adipose Nuclei	Adipose
37	chr13:110890800-110892600	Enhancers	Fetal Muscle Leg	muscle
38	chr13:110890800-110901800	Enhancers	Fetal Heart	heart
39	chr13:110891000-110892800	Enhancers	NHLF	lung
40	chr13:110891000-110896800	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr13:110891000-110896800	Weak transcription	Small Intestine	intestine
42	chr13:110891400-110892600	Weak transcription	Placenta	Placenta
43	chr13:110891400-110892800	Weak transcription	Pancreas	Pancrea
44	chr13:110891400-110896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr13:110891400-110896800	Weak transcription	Liver	Liver
46	chr13:110891400-110908600	Weak transcription	Psoas Muscle	Psoas
47	chr13:110891600-110895000	Weak transcription	Aorta	Aorta
48	chr13:110891600-110896400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:110891600-110896800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr13:110891800-110894200	Weak transcription	HSMM	muscle

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